Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QQ984_RS12170 Genome accession   NZ_CP127223
Coordinates   2346889..2347485 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A6I7TKW7
Organism   Bacillus licheniformis strain Jrh14-10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2341889..2352485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ984_RS12130 (QQ984_12130) - 2342907..2343413 (-) 507 WP_026699179.1 PTS glucose transporter subunit IIA -
  QQ984_RS12135 (QQ984_12135) - 2343589..2344008 (+) 420 WP_003182880.1 hypothetical protein -
  QQ984_RS12140 (QQ984_12140) - 2344027..2344470 (-) 444 WP_011198063.1 YppG family protein -
  QQ984_RS12145 (QQ984_12145) - 2344650..2344850 (+) 201 WP_011198064.1 YppF family protein -
  QQ984_RS12150 (QQ984_12150) - 2344883..2345254 (-) 372 WP_003182887.1 YppE family protein -
  QQ984_RS12155 (QQ984_12155) - 2345312..2345539 (-) 228 WP_003182890.1 YppD family protein -
  QQ984_RS12160 (QQ984_12160) sspM 2345739..2345843 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  QQ984_RS12165 (QQ984_12165) - 2345876..2346808 (-) 933 WP_026080760.1 DUF2515 domain-containing protein -
  QQ984_RS12170 (QQ984_12170) recU 2346889..2347485 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  QQ984_RS12175 (QQ984_12175) - 2347543..2350230 (+) 2688 WP_095259775.1 penicillin-binding protein 1A -
  QQ984_RS12180 (QQ984_12180) - 2350251..2350715 (-) 465 WP_202604373.1 YpoC family protein -
  QQ984_RS12185 (QQ984_12185) nth 2350751..2351413 (-) 663 WP_003182903.1 endonuclease III -
  QQ984_RS12190 (QQ984_12190) - 2351430..2352128 (-) 699 WP_003182905.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=771479 QQ984_RS12170 WP_003182896.1 2346889..2347485(+) (recU) [Bacillus licheniformis strain Jrh14-10]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=771479 QQ984_RS12170 WP_003182896.1 2346889..2347485(+) (recU) [Bacillus licheniformis strain Jrh14-10]
GTGATTCGTTACCCGAACGGCAAATCCTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACACCTGTACAGATTGTCCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTTATCAAAGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGAACCTC
GTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TKW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833