Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QQ984_RS10335 Genome accession   NZ_CP127223
Coordinates   1995085..1995561 (+) Length   158 a.a.
NCBI ID   WP_269195052.1    Uniprot ID   -
Organism   Bacillus licheniformis strain Jrh14-10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990085..2000561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ984_RS10300 (QQ984_10300) - 1990641..1990943 (+) 303 WP_003182160.1 hypothetical protein -
  QQ984_RS10305 (QQ984_10305) - 1991177..1992154 (+) 978 WP_003182162.1 alpha/beta hydrolase family protein -
  QQ984_RS10310 (QQ984_10310) - 1992217..1992459 (+) 243 WP_003182164.1 hypothetical protein -
  QQ984_RS10315 (QQ984_10315) - 1992587..1992991 (+) 405 WP_223307095.1 hypothetical protein -
  QQ984_RS10320 (QQ984_10320) - 1993133..1993729 (+) 597 WP_003182167.1 class I SAM-dependent methyltransferase -
  QQ984_RS10325 (QQ984_10325) - 1993836..1994315 (+) 480 WP_003182169.1 YdhH/YoaO family protein -
  QQ984_RS10330 (QQ984_10330) - 1994349..1994924 (+) 576 WP_003182172.1 GNAT family N-acetyltransferase -
  QQ984_RS10335 (QQ984_10335) rok 1995085..1995561 (+) 477 WP_269195052.1 hypothetical protein Regulator
  QQ984_RS10340 (QQ984_10340) - 1995680..1995853 (+) 174 WP_003182176.1 hypothetical protein -
  QQ984_RS10345 (QQ984_10345) - 1996202..1996822 (-) 621 WP_003182178.1 hypothetical protein -
  QQ984_RS10350 (QQ984_10350) - 1997536..1998120 (+) 585 WP_009328246.1 TetR family transcriptional regulator -
  QQ984_RS10355 (QQ984_10355) - 1998202..1998537 (+) 336 WP_011198004.1 multidrug efflux SMR transporter -
  QQ984_RS10360 (QQ984_10360) - 1998537..1998854 (+) 318 WP_011198005.1 multidrug efflux SMR transporter -
  QQ984_RS10365 (QQ984_10365) speG 1998883..1999425 (+) 543 WP_003182184.1 spermidine N1-acetyltransferase -
  QQ984_RS10370 (QQ984_10370) - 1999463..1999819 (-) 357 WP_003182186.1 YxeA family protein -
  QQ984_RS10375 (QQ984_10375) - 2000002..2000436 (+) 435 WP_003182188.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18286.15 Da        Isoelectric Point: 10.2016

>NTDB_id=771471 QQ984_RS10335 WP_269195052.1 1995085..1995561(+) (rok) [Bacillus licheniformis strain Jrh14-10]
MFNEREALRLRLEQLGDAEIQVMRELRKEREGIYSKLRELDRESEPAINKKSSLIDLASAAAEELKQSQHAADKHPPIKT
PSHTIFQSKTTIQREAAINILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHFILHKEKDL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=771471 QQ984_RS10335 WP_269195052.1 1995085..1995561(+) (rok) [Bacillus licheniformis strain Jrh14-10]
ATGTTCAACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTAGGTGATGCGGAGATCCAGGTGATGCGGGAATTGCG
AAAAGAACGAGAGGGCATTTATTCGAAGCTGCGTGAATTGGATCGGGAGAGTGAGCCTGCAATTAACAAAAAATCTTCAT
TAATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAGCATGCCGCTGACAAACATCCGCCTATCAAGACC
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGTGAGGCTGCCATAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACGACATTTATGAAGA
GCTTAATGAAACATCGCCCAGATATTAAAAAGCCTGCCCGCGGCCATTTTATTTTGCATAAAGAAAAAGACCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

44.505

100

0.513