Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   QQ984_RS06515 Genome accession   NZ_CP127223
Coordinates   1288714..1289862 (+) Length   382 a.a.
NCBI ID   WP_009328825.1    Uniprot ID   Q65LB1
Organism   Bacillus licheniformis strain Jrh14-10     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1283714..1294862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ984_RS06495 (QQ984_06495) - 1284259..1284714 (+) 456 WP_009328829.1 tripartite tricarboxylate transporter TctB family protein -
  QQ984_RS06500 (QQ984_06500) - 1284737..1286242 (+) 1506 WP_016885905.1 tripartite tricarboxylate transporter permease -
  QQ984_RS06505 (QQ984_06505) - 1286262..1286978 (-) 717 WP_009328827.1 response regulator -
  QQ984_RS06510 (QQ984_06510) - 1287001..1288596 (-) 1596 WP_071583753.1 sensor histidine kinase -
  QQ984_RS06515 (QQ984_06515) coiA 1288714..1289862 (+) 1149 WP_009328825.1 competence protein CoiA family protein Machinery gene
  QQ984_RS06520 (QQ984_06520) pepF 1290075..1291904 (+) 1830 WP_281510530.1 oligoendopeptidase F Regulator
  QQ984_RS06525 (QQ984_06525) - 1291961..1292128 (-) 168 WP_009328823.1 hypothetical protein -
  QQ984_RS06530 (QQ984_06530) spxH 1292540..1293442 (-) 903 WP_069500397.1 protease adaptor protein SpxH -
  QQ984_RS06535 (QQ984_06535) - 1293439..1293837 (-) 399 WP_003180652.1 thiol management oxidoreductase -
  QQ984_RS06540 (QQ984_06540) - 1294119..1294772 (-) 654 WP_011197774.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 44647.01 Da        Isoelectric Point: 9.9815

>NTDB_id=771445 QQ984_RS06515 WP_009328825.1 1288714..1289862(+) (coiA) [Bacillus licheniformis strain Jrh14-10]
MFSAMIDQGGTICLADGYKAEDLKRLRKRHAFYCPVCRCELDLKIGSVKLPHFAHKPDAACPVPHEPESPYHLKGKRLLY
EWLGRQGLRPVLEPYLQEIRQRPDLLLEHGTRQVAVEFQCANLNAAAYRKRTEGFLRLGIEPVWILGGNRIKRLTGDLFQ
LSRFHWQFIQKSDKPPKLLFFCPEQKAFIILEHLIPFQTNKTSASLRFLPLAEASWRNVTERESRSPLQLKGWKKNILSF
RMSAVRFLSKETKQIAALFYENHQLPLPFFPSEAFLPVPSGYIFAHPVYVWQGYLFLFITKHDTFRLQSALHYMDWLIKG
KRLKLRWSGRQTAADAVGEYICFLHKKGFLVRKEEFYYSAGSFVPEPRLEALLKRDEHYFSE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=771445 QQ984_RS06515 WP_009328825.1 1288714..1289862(+) (coiA) [Bacillus licheniformis strain Jrh14-10]
ATGTTCAGTGCAATGATCGATCAAGGCGGGACCATCTGCCTTGCCGACGGATACAAAGCCGAAGATCTCAAGCGATTGAG
AAAAAGACATGCATTTTACTGCCCGGTGTGCCGGTGTGAACTCGACCTGAAAATCGGTTCCGTCAAGCTTCCGCATTTCG
CTCATAAGCCGGATGCAGCATGTCCGGTGCCCCATGAACCGGAGAGCCCCTATCACCTGAAAGGAAAGCGGCTGTTGTAC
GAATGGCTTGGCAGACAAGGACTCCGCCCGGTGCTTGAACCGTATTTGCAAGAGATCAGACAAAGGCCCGATTTGCTGCT
GGAACACGGAACCCGCCAGGTTGCGGTTGAATTTCAATGTGCGAATCTCAATGCCGCAGCGTATCGCAAAAGGACCGAAG
GCTTTCTCAGACTGGGAATCGAGCCCGTATGGATTCTCGGCGGAAACCGGATAAAACGCTTGACGGGGGATTTATTTCAG
CTTTCGCGGTTTCACTGGCAGTTCATTCAGAAAAGCGACAAGCCCCCAAAGCTCCTGTTTTTTTGCCCCGAACAAAAGGC
TTTCATCATCCTCGAACACCTCATTCCCTTTCAAACAAACAAAACATCCGCATCCTTGCGCTTTCTTCCTCTTGCTGAAG
CAAGCTGGCGTAATGTAACAGAACGAGAAAGCCGTTCGCCTCTCCAGCTCAAAGGCTGGAAAAAGAACATCCTCAGCTTT
CGGATGTCGGCCGTGCGTTTTTTATCAAAAGAAACGAAGCAGATTGCCGCCCTCTTTTATGAAAATCATCAGCTTCCGCT
CCCGTTTTTTCCCTCAGAAGCCTTTCTCCCGGTGCCGTCAGGCTATATTTTTGCCCACCCGGTTTATGTATGGCAAGGGT
ACCTTTTTTTATTTATAACGAAGCATGATACATTTCGCCTGCAGTCTGCGCTTCACTATATGGACTGGCTCATCAAGGGC
AAAAGGCTGAAGCTGAGATGGAGCGGGCGGCAAACGGCTGCGGATGCCGTCGGTGAATACATTTGTTTTTTGCATAAAAA
AGGATTTTTGGTGAGGAAAGAGGAATTTTATTATTCCGCGGGTTCTTTTGTTCCGGAGCCGCGGTTAGAGGCGCTGTTAA
AAAGGGATGAACATTATTTTTCCGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q65LB1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

42.308

95.288

0.403