Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP67_RS08580 Genome accession   NZ_CP115289
Coordinates   1792263..1792820 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain F004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1787263..1797820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP67_RS08560 (PCP67_08550) pilR 1788539..1789876 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PCP67_RS08565 (PCP67_08555) thiO 1789922..1791016 (-) 1095 WP_031756968.1 glycine oxidase ThiO -
  PCP67_RS08570 (PCP67_08560) - 1791151..1791660 (+) 510 WP_034014851.1 GspH/FimT family pseudopilin -
  PCP67_RS08575 (PCP67_08565) - 1791766..1792272 (+) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  PCP67_RS08580 (PCP67_08570) pilV 1792263..1792820 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PCP67_RS08585 (PCP67_08575) pilW 1792817..1793641 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP67_RS08590 (PCP67_08580) pilX 1793638..1794225 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PCP67_RS08595 (PCP67_08585) pilY1 1794237..1797728 (+) 3492 WP_023111845.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=771404 PCP67_RS08580 WP_003094697.1 1792263..1792820(+) (pilV) [Pseudomonas aeruginosa strain F004]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=771404 PCP67_RS08580 WP_003094697.1 1792263..1792820(+) (pilV) [Pseudomonas aeruginosa strain F004]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978