Detailed information NTG0771380

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QOM21_RS21195
• Genome accession: NZ_CP127172
• Coordinates: 4822632..4823633 (+)
• Length: 333 a.a.
• NCBI ID: WP_407552260.1
• Uniprot ID: -
• Organism: Streptomyces sp. Pv4-95 voucher LV 740
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4817632..4828633

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOM21_RS21165 (QOM21_21160)	-	4817738..4818787 (-)	1050	WP_407552251.1	questin oxidase family protein	-
QOM21_RS21170 (QOM21_21165)	-	4819129..4819554 (+)	426	WP_407552252.1	pyridoxamine 5'-phosphate oxidase family protein	-
QOM21_RS21175 (QOM21_21170)	-	4819679..4820215 (+)	537	WP_407555742.1	pyridoxamine 5'-phosphate oxidase family protein	-
QOM21_RS21180 (QOM21_21175)	-	4820245..4821000 (-)	756	WP_407552254.1	YoaK family protein	-
QOM21_RS21185 (QOM21_21180)	-	4821261..4821782 (-)	522	WP_407552256.1	hypothetical protein	-
QOM21_RS21190 (QOM21_21185)	-	4821848..4822459 (-)	612	WP_407552258.1	GNAT family N-acetyltransferase	-
QOM21_RS21195 (QOM21_21190)	rpoS	4822632..4823633 (+)	1002	WP_407552260.1	RNA polymerase sigma factor RpoD/SigA	Regulator
QOM21_RS21200 (QOM21_21195)	-	4823936..4824778 (+)	843	WP_407552261.1	DeoR/GlpR family DNA-binding transcription regulator	-
QOM21_RS21205 (QOM21_21200)	pfkB	4824775..4825722 (+)	948	WP_407552263.1	1-phosphofructokinase	-
QOM21_RS21210 (QOM21_21205)	-	4826195..4828321 (+)	2127	WP_407552265.1	fructose-specific PTS transporter subunit EIIC	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 36608.06 Da
• Isoelectric Point: 4.8026

>NTDB_id=771380 QOM21_RS21195 WP_407552260.1 4822632..4823633(+) (rpoS) [Streptomyces sp. Pv4-95 voucher LV 740]
MATRAVARRQATSSGSEGASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQQILDGEVTEGNAA
GADREELEALVAESAKAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEVAGELGSTPARVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLSLLRSEELEGLIDRLDHRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLDL
KRMAGDTGFDAAA

Nucleotide

• Length: 1002 bp

>NTDB_id=771380 QOM21_RS21195 WP_407552260.1 4822632..4823633(+) (rpoS) [Streptomyces sp. Pv4-95 voucher LV 740]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGGCCACCAGCAGCGGTTCTGAGGGGGCCAGCAGCGTTCGCGCCGTAGGCGG
GGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAGATCGCGCGCACCCCGCTGCTGGATGCCGCGAAGGAGG
TCGAGCTTTCCCAGACCATCGAGGCGGGCGTCTACGCCCAGCAGATCCTGGACGGCGAGGTCACCGAAGGCAATGCCGCA
GGTGCCGACCGTGAGGAGCTGGAGGCGCTGGTCGCCGAGAGCGCAAAGGCCAAGGACGTCTTCATCCGTTCCAACCTTCG
GCTCGTCGTGGCGGTCGCCCGCCGCTACCCGCGCGCCGGTCTGCCGCTGCTGGATCTGATCCAGGAGGGCAACGCCGGTC
TGGTGCGCGCGGTGGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCCCGCACGATCCGGCTGCCCGTGCACCTCGTCGAGGAGCTGGGCCGGATCCGCCG
GGTGCAGCGCGAGTTCAACCGGGAGAACGGCCGCGACCCGGAGCCCGCGGAGGTCGCGGGCGAGCTGGGCTCCACGCCCG
CCCGTGTCACCGACGTCCTCGACTGGGCCCGCGACCCGGTCAGCCTCAACATGTCGGTGGACGACGACGGCGACACCCAG
TTCGGCGATCTGCTGGAGGACACCTCCGCGGCCTCGCCCGAGCAGTCCGTGCTCTCGCTGCTGCGCAGTGAGGAGCTGGA
GGGCCTGATCGACCGCCTCGACCACCGCACCGCCTCGATCATCAAGGCGCGCTACGGCATCGAGGACGGCCGCGAGCGCA
CGCTGACCGAGGTCGGCAAGCAGCACGGCCTCACCCGTGAGCGGATCCGCCAGATAGAGAAGCACGCGCTCCTCGACCTG
AAGCGGATGGCCGGCGACACGGGGTTCGACGCCGCCGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (33-66)

• Sigma-70 region 3 (Sigma70_r3) (180-256)

• Sigma-70, region 4 (Sigma70_r4) (270-321)

• Sigma-70 region 2 (Sigma70_r2) (101-170)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.867	90.39	0.36