Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QOM21_RS15670 Genome accession   NZ_CP127172
Coordinates   3579093..3581096 (-) Length   667 a.a.
NCBI ID   WP_407550652.1    Uniprot ID   -
Organism   Streptomyces sp. Pv4-95 voucher LV 740     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3574093..3586096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM21_RS15645 (QOM21_15655) - 3574335..3574640 (-) 306 WP_407550643.1 hypothetical protein -
  QOM21_RS15650 (QOM21_15660) - 3574680..3575906 (-) 1227 WP_407550645.1 S1C family serine protease -
  QOM21_RS15655 (QOM21_15665) - 3576060..3577085 (-) 1026 WP_407550646.1 LacI family DNA-binding transcriptional regulator -
  QOM21_RS15660 (QOM21_15670) - 3577110..3577949 (-) 840 WP_407550648.1 response regulator transcription factor -
  QOM21_RS15665 (QOM21_15675) - 3578196..3579041 (+) 846 WP_407550650.1 alpha/beta hydrolase family protein -
  QOM21_RS15670 (QOM21_15680) rcrQ 3579093..3581096 (-) 2004 WP_407550652.1 ABC transporter ATP-binding protein Regulator
  QOM21_RS15675 (QOM21_15685) rcrP 3581093..3582826 (-) 1734 WP_407550654.1 ABC transporter ATP-binding protein Regulator
  QOM21_RS15680 (QOM21_15690) - 3583036..3583281 (+) 246 WP_407555691.1 MoaD/ThiS family protein -
  QOM21_RS15685 (QOM21_15695) - 3583292..3584668 (+) 1377 WP_407550656.1 hypothetical protein -
  QOM21_RS15690 (QOM21_15700) - 3584849..3585550 (+) 702 WP_407550658.1 DUF2993 domain-containing protein -
  QOM21_RS15695 - 3585829..3585936 (+) 108 WP_371873992.1 Ms5788A family Cys-rich leader peptide -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 71594.52 Da        Isoelectric Point: 6.2128

>NTDB_id=771368 QOM21_RS15670 WP_407550652.1 3579093..3581096(-) (rcrQ) [Streptomyces sp. Pv4-95 voucher LV 740]
MTTADKEAAGPSEAPPAPAAPRRGPAPAAGPGRMMGGQPIEKSMDFKGSGKRLLRQMRPERGVISVALVLGVLSVALSVV
GPKVLGHATDLIMAGLVGRGLPDGLTKAQAADRLRARGEDGLADMLGTMPVVPGQGIDFGAVGVVLLWVALIYAGASLFG
FVQARIATRVVQRAVFRMREQVEEKLARLPLSYFDKQQRGEVLSRATNDIDNIQQTLQQTLSQIVASLLTIVGVLVMMFW
ISPLLALVALITVPVSVVVATKVGKRAQPQFVQQWKTTGKLNAHIEEMYTGHALVKVFGRQRESAELFREQNDALYAAGF
KAQFISGIIQPAMMFIGNLNYVLVAVVGGLRVASGSLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERVFELL
DAAEQDPDAELPARPEHVTGRVEFKNVSFRYDEDKPLIEDLSLAVHPGQTVAIVGPTGAGKTTLVNLLMRFYEVRGGRIT
LDGVDIAEMSREELRSHIGMVLQDTWLFGGTIAENIAYGAPAGISRDKIVEAARATHVDRFVRTLPDGYDSVIDEEGGNV
SVGEKQLITIARAFLAEPAILVLDEATSSVDTRTEVLIQHAMAQLRTGRTSFVIAHRLSTIRDADVILVMESGAIVEQGT
HDGLLAAGGAYARLYAAQFAEAMAETE

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=771368 QOM21_RS15670 WP_407550652.1 3579093..3581096(-) (rcrQ) [Streptomyces sp. Pv4-95 voucher LV 740]
GTGACCACCGCGGACAAGGAAGCGGCCGGGCCGTCCGAGGCCCCGCCGGCGCCGGCGGCGCCCCGGCGCGGACCGGCTCC
GGCGGCCGGGCCCGGCCGGATGATGGGCGGGCAGCCCATCGAGAAGTCGATGGACTTCAAGGGCTCGGGCAAGCGGCTGC
TGCGCCAGATGCGGCCCGAGCGCGGCGTGATCTCGGTCGCGCTGGTGCTCGGCGTGCTGAGCGTGGCGCTGAGCGTGGTG
GGGCCCAAGGTCCTCGGCCACGCCACCGACCTGATCATGGCGGGCCTCGTCGGCCGCGGGCTGCCCGACGGCCTCACGAA
GGCCCAGGCCGCCGACCGGCTGCGGGCGCGCGGCGAGGACGGGCTCGCCGACATGCTCGGCACGATGCCGGTCGTGCCCG
GCCAGGGCATCGACTTCGGCGCCGTCGGCGTGGTCCTGCTGTGGGTCGCCCTGATCTACGCGGGTGCCTCGCTCTTCGGA
TTCGTCCAGGCGCGGATCGCCACCCGCGTCGTCCAGCGCGCGGTCTTCCGGATGCGTGAGCAGGTCGAGGAGAAGCTGGC
CCGGCTGCCGCTGAGCTACTTCGACAAGCAGCAGCGCGGCGAGGTGCTCTCCCGGGCGACCAACGACATCGACAACATCC
AGCAGACGCTCCAGCAGACCCTCAGCCAGATCGTGGCCTCGCTGCTGACCATCGTCGGTGTGCTGGTGATGATGTTCTGG
ATCTCGCCGCTGCTCGCGCTGGTCGCCCTGATCACCGTCCCGGTATCGGTGGTCGTCGCCACCAAGGTCGGCAAGCGTGC
CCAGCCGCAGTTCGTCCAGCAGTGGAAGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACGCCC
TGGTGAAGGTCTTCGGCCGCCAGCGGGAGTCCGCGGAGCTGTTCCGCGAGCAGAACGACGCCCTCTACGCCGCCGGCTTC
AAGGCGCAGTTCATCTCCGGGATCATCCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGTCCTGGTCGCGGTCGT
CGGCGGCCTCCGTGTCGCGTCGGGCAGCCTGTCCATCGGTGACGTCCAGGCGTTCATCCAGTACTCCCGGCAGTTCAGCC
AGCCGCTCACCCAGGTCGCCTCGATGGCCAACCTCGTGCAGTCCGGCGTGGCCTCCGCCGAGCGGGTCTTCGAACTCCTC
GACGCGGCCGAGCAGGACCCCGACGCCGAGCTGCCGGCCCGCCCCGAACACGTCACCGGACGCGTCGAGTTCAAGAACGT
CTCCTTCCGGTACGACGAGGACAAGCCGCTCATCGAGGACCTGTCGCTGGCCGTCCACCCCGGCCAGACGGTCGCCATCG
TCGGTCCCACCGGCGCCGGCAAGACCACGCTCGTCAACCTCCTCATGCGGTTCTACGAGGTGCGCGGCGGGCGGATCACC
CTCGACGGCGTCGACATCGCCGAGATGTCACGCGAGGAGCTGCGCTCCCACATCGGCATGGTCCTCCAGGACACCTGGCT
CTTCGGCGGCACCATCGCCGAGAACATCGCCTACGGCGCGCCCGCGGGCATCTCGCGCGACAAGATCGTCGAGGCGGCCA
GGGCCACCCACGTCGACCGCTTCGTGCGCACCCTGCCCGACGGCTACGACAGCGTCATCGACGAGGAGGGCGGCAATGTC
TCGGTCGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTCGCCGAGCCCGCCATCCTCGTCCTCGACGAGGCCAC
CAGCTCGGTCGACACCCGCACCGAGGTGCTGATCCAGCACGCCATGGCGCAACTGCGCACCGGCCGCACCAGTTTCGTCA
TCGCGCACCGCCTCTCCACCATCCGCGACGCCGACGTGATCCTGGTGATGGAGTCCGGCGCGATCGTCGAGCAGGGCACC
CATGACGGCCTGCTGGCGGCCGGCGGCGCCTACGCCCGCCTGTACGCGGCGCAGTTCGCGGAGGCGATGGCGGAGACCGA
GTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(83-376)

ABC transporter (ABC_tran)

(439-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.586

92.654

0.385