Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PCP32_RS05065 Genome accession   NZ_CP115285
Coordinates   1074681..1075316 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain F007     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1069681..1080316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP32_RS05035 (PCP32_05040) murB 1070779..1071798 (-) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -
  PCP32_RS05040 (PCP32_05045) - 1071795..1072259 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  PCP32_RS05045 (PCP32_05050) kdsB 1072259..1073023 (-) 765 WP_058151849.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCP32_RS05050 (PCP32_05055) - 1073023..1073208 (-) 186 WP_003091157.1 Trm112 family protein -
  PCP32_RS05055 (PCP32_05060) lpxK 1073246..1074244 (-) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  PCP32_RS05060 (PCP32_05065) - 1074244..1074684 (-) 441 WP_023125617.1 ExbD/TolR family protein -
  PCP32_RS05065 (PCP32_05070) exbB 1074681..1075316 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PCP32_RS05070 (PCP32_05075) comA 1075389..1077614 (-) 2226 WP_058151848.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PCP32_RS05075 (PCP32_05080) - 1077745..1078278 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PCP32_RS05080 (PCP32_05085) - 1078354..1079598 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=771295 PCP32_RS05065 WP_003091163.1 1074681..1075316(-) (exbB) [Pseudomonas aeruginosa strain F007]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=771295 PCP32_RS05065 WP_003091163.1 1074681..1075316(-) (exbB) [Pseudomonas aeruginosa strain F007]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81