Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QQS40_RS07085 Genome accession   NZ_CP127167
Coordinates   1371651..1373477 (+) Length   608 a.a.
NCBI ID   WP_297568640.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1366651..1378477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS07060 msbA 1366657..1368405 (+) 1749 WP_297568630.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QQS40_RS07065 lpxK 1368459..1369439 (+) 981 WP_329504551.1 tetraacyldisaccharide 4'-kinase -
  QQS40_RS07070 - 1369457..1369636 (+) 180 WP_070583226.1 Trm112 family protein -
  QQS40_RS07075 kdsB 1369646..1370413 (+) 768 WP_329504555.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQS40_RS07080 - 1370511..1371470 (+) 960 WP_289901244.1 hypothetical protein -
  QQS40_RS07085 uvrC 1371651..1373477 (+) 1827 WP_297568640.1 excinuclease ABC subunit UvrC Machinery gene
  QQS40_RS07090 - 1373547..1374266 (+) 720 WP_289901242.1 TerC family protein -
  QQS40_RS07095 - 1374304..1375356 (-) 1053 WP_289901241.1 ABC transporter ATP-binding protein -
  QQS40_RS07100 - 1375369..1376889 (-) 1521 WP_289901240.1 ABC transporter permease -
  QQS40_RS07105 - 1376976..1377974 (-) 999 WP_289901239.1 iron ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 69051.91 Da        Isoelectric Point: 9.1442

>NTDB_id=771272 QQS40_RS07085 WP_297568640.1 1371651..1373477(+) (uvrC) [Haemophilus parainfluenzae strain HP01]
MFDSKKFLSDVSHKPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVSSIHHIDTTITSSETEALLLEHN
FIKLYQPRYNVLLRDDKSYPFILLTKERHPRITSYRGTKKIAGEYFGPYPHAGAVRETLSLMQKLFPVRQCENSVYNNRS
RPCLQYQIGRCSAPCVAGYVSDEEYNQQVELARLFLQGKDQQVLDYLIGKMEQASRDLDFEGAARYRDQIQAVRAVIEKQ
FVSNERLDDMDIMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELAATFVGQFYLQGHQGRSIPNSIIVDHK
LDEKAELEALLTEQAGRKVVIQESAKGDKGKYLQLAQINAKAALATQLKQSSRMHERYQALCELLDMPEIKRMECFDISH
TMGNQTVASCVVFNQEGPLKSDYRRFNIEGITGGDDYAAMEQALKKRYDRDLEEDKIPDIIFIDGGKGQLNRALAVFHHL
NVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRDESHNHAISGHRQKRQKAFTQSGLETIE
GVGAKRRQALLKYLGGLQGVKNATLDEIASVPGISKALAEKIFETLKS

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=771272 QQS40_RS07085 WP_297568640.1 1371651..1373477(+) (uvrC) [Haemophilus parainfluenzae strain HP01]
ATGTTTGATTCCAAAAAGTTTCTATCCGATGTTTCTCATAAACCTGGTGTGTATCGTATGTATGACGATAAAGATCAGGT
TATTTATGTGGGTAAAGCGAAAGATCTTAAAAAGCGCCTTTCCAGCTATTTCCGAAAAAACTTAAGCAGCAAAAAAACAG
AAGCCTTGGTGTCGTCAATTCATCATATTGATACGACGATTACCTCTTCAGAAACAGAAGCATTATTGCTTGAGCATAAT
TTCATTAAGCTTTATCAACCTCGTTATAACGTATTATTGCGAGATGATAAATCCTATCCTTTTATTTTATTGACGAAAGA
ACGTCATCCTCGTATAACTTCTTATCGTGGAACAAAAAAAATTGCAGGCGAGTATTTCGGACCTTATCCTCATGCGGGTG
CCGTGCGTGAAACCTTGTCGTTAATGCAAAAATTATTCCCTGTTCGTCAATGTGAAAATTCAGTTTATAACAATCGTTCC
CGCCCTTGTTTGCAATATCAAATCGGGCGTTGTTCTGCACCTTGTGTGGCAGGTTATGTGAGCGATGAAGAATATAACCA
ACAAGTTGAATTAGCACGACTATTTTTACAAGGAAAAGATCAGCAAGTATTAGATTATCTCATTGGTAAAATGGAACAGG
CGAGCCGAGATTTAGATTTTGAAGGAGCTGCACGCTATCGTGATCAAATTCAAGCGGTTCGTGCGGTTATCGAAAAACAA
TTTGTTTCCAATGAACGTTTGGACGATATGGATATTATGTCTATTGCGTATCAGCACGGTTTAGCTTGTGTTCAAGTGAT
GTTTATTCGTCAAGGTAAAGTATTAGGCAATCGCAGTTATTTTCCGAAAGTGCCTGCTAATACAGATTTATCTGAACTCG
CAGCCACTTTTGTTGGGCAATTCTATTTGCAAGGTCATCAGGGCAGAAGTATTCCTAATAGTATTATTGTGGATCATAAA
TTAGATGAAAAAGCGGAGCTTGAGGCCTTATTAACTGAACAAGCTGGCCGAAAAGTTGTGATACAAGAATCTGCTAAAGG
TGATAAAGGTAAATATCTACAACTCGCACAAATTAATGCCAAAGCGGCTTTAGCGACTCAACTTAAACAATCTTCCAGAA
TGCATGAACGTTATCAGGCGCTTTGTGAATTGCTCGATATGCCTGAAATTAAACGTATGGAATGTTTTGATATTAGTCAT
ACGATGGGGAATCAAACCGTCGCATCTTGCGTGGTATTTAATCAAGAAGGCCCACTGAAATCAGATTATCGCCGTTTTAA
TATTGAAGGCATTACTGGTGGCGATGATTATGCCGCGATGGAGCAAGCCTTAAAGAAACGTTACGACCGCGATCTTGAGG
AAGATAAAATCCCCGATATTATTTTTATTGATGGTGGTAAAGGGCAGCTTAATCGTGCCTTAGCGGTTTTTCATCACCTC
AACGTAAAATGGGATAAAAATCGACCGCACTTAATTGGTGTGGCAAAAGGAGTGGATCGTCGAGCAGGACAAGAGGTGTT
GATTATCAGCAAACAAGATCGTGAAATCCATTTGCCGGATGATAGTCTTGCGCTGCATTTAATCCAACATATTCGAGATG
AAAGCCATAATCATGCGATTAGCGGTCATCGTCAAAAACGCCAAAAAGCCTTTACCCAAAGTGGATTAGAAACCATTGAA
GGGGTGGGCGCTAAACGACGTCAAGCCTTGCTGAAATATTTAGGGGGATTGCAAGGTGTGAAAAATGCCACGTTGGATGA
GATCGCCTCTGTACCCGGTATTTCTAAAGCGTTAGCAGAAAAGATTTTCGAGACCTTAAAAAGTTAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-540)

Helix-hairpin-helix domain (HHH_5)

(556-607)

GIY-YIG catalytic domain (GIY-YIG)

(15-90)

UvrB/uvrC motif (UVR)

(210-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.96

98.355

0.373
  uvrC Streptococcus pneumoniae R6

37.625

98.355

0.37
  uvrC Streptococcus pneumoniae D39

37.625

98.355

0.37