Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QQS40_RS05005 Genome accession   NZ_CP127167
Coordinates   979516..980118 (+) Length   200 a.a.
NCBI ID   WP_289901572.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 974516..985118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS04985 - 975567..976937 (+) 1371 WP_329506525.1 L-serine ammonia-lyase -
  QQS40_RS04990 - 976994..977821 (-) 828 WP_329506527.1 transferrin-binding protein-like solute binding protein -
  QQS40_RS04995 - 977898..978989 (-) 1092 WP_329506529.1 metallophosphoesterase -
  QQS40_RS05000 - 979125..979454 (+) 330 WP_005696839.1 YbaB/EbfC family nucleoid-associated protein -
  QQS40_RS05005 recR 979516..980118 (+) 603 WP_289901572.1 recombination mediator RecR Machinery gene
  QQS40_RS05010 - 980123..982066 (+) 1944 WP_329506531.1 DNA topoisomerase III -
  QQS40_RS05015 secG 982184..982531 (+) 348 WP_070582988.1 preprotein translocase subunit SecG -
  QQS40_RS05025 - 982842..984068 (+) 1227 WP_329506534.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22145.26 Da        Isoelectric Point: 6.5735

>NTDB_id=771263 QQS40_RS05005 WP_289901572.1 979516..980118(+) (recR) [Haemophilus parainfluenzae strain HP01]
MQSSPLLEHLIENFRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEERCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEI
CHQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=771263 QQS40_RS05005 WP_289901572.1 979516..980118(+) (recR) [Haemophilus parainfluenzae strain HP01]
ATGCAAAGCAGTCCACTTTTAGAACATCTTATTGAAAACTTTCGTTGCTTGCCGGGTGTAGGCCCGAAATCAGCGCAGCG
CATGGCTTATCATCTTTTACAGCGCAATCGTAGCGGTGGGATGAATTTAGCTCGTGCATTAACGGAAGCGATGTCTAAAA
TTGGGCATTGTTCGCAGTGTCGTGATTTTACCGAAGAGGAAAGGTGCAATATTTGTAACAATCCTCGCCGTCAAAATTCA
GGTTTGCTTTGCGTGGTGGAAATGCCGGCTGATATCCAAGCAATTGAGCAAACAGGCCAGTTTTCTGGACGTTATTTTGT
CTTAATGGGGCATTTATCGCCTTTAGATGGTATTGGGCCAAAAGAGATTGGTTTGGATTTATTGCAAAAACGTCTGGTAG
AAGAATCTTTCCATGAAGTGATTTTAGCGACCAATCCAACGGTAGAAGGCGATGCCACAGCCAATTATATTGCTGAAATT
TGCCATCAACATAATATTAAAGTAAGCCGTATTGCTCACGGGATCCCTGTCGGTGGGGAATTAGAAACTGTGGACGGCAC
AACCTTAACCCACTCTTTCTTAGGTCGTCGTCAGATCGACTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43