Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QQS40_RS04400 Genome accession   NZ_CP127167
Coordinates   865957..867822 (+) Length   621 a.a.
NCBI ID   WP_289901657.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 860957..872822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS04370 yihI 861726..862283 (+) 558 WP_289901662.1 Der GTPase-activating protein YihI -
  QQS40_RS04375 - 862289..862732 (+) 444 WP_289901661.1 DUF2489 domain-containing protein -
  QQS40_RS04380 hemN 862732..864099 (+) 1368 WP_329506384.1 oxygen-independent coproporphyrinogen III oxidase -
  QQS40_RS04385 lysA 864153..865403 (-) 1251 WP_329506386.1 diaminopimelate decarboxylase -
  QQS40_RS04390 lptM 865431..865556 (-) 126 WP_005697346.1 LPS translocon maturation chaperone LptM -
  QQS40_RS04395 cyaY 865652..865957 (+) 306 WP_289901658.1 iron donor protein CyaY -
  QQS40_RS04400 recQ 865957..867822 (+) 1866 WP_289901657.1 DNA helicase RecQ Machinery gene
  QQS40_RS04405 - 867865..869406 (-) 1542 WP_289901656.1 YjjI family glycine radical enzyme -
  QQS40_RS04410 - 869597..870262 (+) 666 WP_289901655.1 YczE/YyaS/YitT family protein -
  QQS40_RS04415 - 870212..871243 (-) 1032 WP_329506728.1 glycosyltransferase family 9 protein -
  QQS40_RS04420 - 871237..872484 (-) 1248 WP_329506390.1 O-antigen ligase -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 70498.01 Da        Isoelectric Point: 8.4217

>NTDB_id=771261 QQS40_RS04400 WP_289901657.1 865957..867822(+) (recQ) [Haemophilus parainfluenzae strain HP01]
MAELAEYAPQKTDLKTTALHTLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTLVISPLI
SLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYVSPEKVMTNSFFQLISYAQISFIAIDEAHCISQWG
HDFRPEYTQLGSLKAAFPNAPIMALTATADYATRQDILTHLKLDNPHKYIGSFDRPNIRYTLEEKFKPMEQLTRFVLAQK
GKSGIVYCNSRSKVERIAETLRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPR
SIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEYRQT
PCQNCDICLDPPKKYDGLIDAQKVMSTIYRVGQRFGVQYVIAVLRGMHNQKIVERQHDKLSVYGIGKDKSKEHWQSVIRQ
LIHLGFIQQVLGEFNSATLQLTESARPVLKGEVPLELAMPRISSINKIVHTSHKNTVVNYDKDLFARLRFLRKQLADKEN
IPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGAIKLERFGQPFMALIREHKAILEKAEKR

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=771261 QQS40_RS04400 WP_289901657.1 865957..867822(+) (recQ) [Haemophilus parainfluenzae strain HP01]
ATGGCCGAACTCGCGGAATATGCCCCGCAAAAAACAGACTTAAAAACGACCGCACTTCATACGTTACGGTCTGTTTTTGG
TTACCAATCTTTCCGCAAAGGGCAGGAAGAAGTGATTCATGCTGCGTTAAGCGGTCAGGATGCCTTAGTGGTGATGGCCA
CAGGAAATGGCAAATCCCTGTGTTATCAAATTCCAGCACTTTGTTTTCCCGGTCTCACATTAGTGATTTCGCCTTTGATT
TCTTTGATGAAAGATCAGGTGGATCAACTCCAAGCAAACGGCATTGAAGCGGATTTTCTAAACTCTAGTCAGACGCCAGA
ACAACAACAGCAAGTTGAAAATAAGCTGATTTCAGGTCAATTAAAATTATTATATGTTTCGCCTGAAAAAGTGATGACAA
ACAGCTTTTTTCAGCTGATTTCTTATGCTCAAATTTCCTTTATTGCTATTGATGAAGCGCATTGTATTTCACAGTGGGGG
CATGATTTTCGCCCTGAATATACCCAACTTGGTAGCTTAAAAGCAGCGTTTCCAAATGCGCCAATTATGGCATTAACGGC
GACAGCGGATTACGCGACAAGACAGGATATTCTCACTCATCTTAAATTGGATAATCCTCACAAATACATAGGCAGTTTTG
ATCGCCCAAATATTCGTTATACGTTGGAAGAAAAGTTTAAGCCGATGGAGCAGCTTACGCGTTTTGTTTTAGCTCAAAAA
GGCAAAAGCGGCATTGTATATTGTAATAGTCGTTCGAAAGTAGAACGTATAGCCGAAACTTTGAGAAATAAAGGCGTGTC
GGCTGCGGCGTATCATGCGGGAATGGAAACCGCACTGCGTGAACGAGTCCAGCAAGATTTCCAACGAGACAATGTTCAAG
TTGTGGTTGCGACGATTGCGTTTGGCATGGGGATTAATAAATCTAACGTACGTTTTGTCGCCCATTTTGATTTGCCGAGA
AGCATTGAATCATATTACCAAGAAACTGGTCGTGCGGGACGAGATGATTTACCAGCGGAAGCGGTGCTTTTCTACGAACC
GGCTGATTATGCGTGGTTACAGAAAATTTTGCTTGAAAAGCCAGAGACGCCACAACGTCAAATTGAACAACATAAATTGG
AAGCCATTGGTGAATTTGCCGAAAGTCAAACTTGTCGCCGCTTGGTATTACTCAATTATTTTGGTGAATATCGTCAAACA
CCTTGTCAAAACTGCGATATTTGTCTTGACCCGCCAAAGAAATATGATGGCTTAATTGATGCGCAAAAAGTGATGTCGAC
GATTTATCGTGTGGGGCAACGTTTCGGTGTGCAATATGTGATTGCGGTATTGCGAGGGATGCATAATCAAAAAATTGTAG
AACGCCAACATGATAAGTTAAGTGTTTATGGCATTGGTAAAGATAAAAGCAAAGAACATTGGCAATCTGTCATTCGCCAA
CTGATTCATCTTGGTTTTATTCAACAAGTGCTTGGTGAGTTTAATAGTGCCACGCTTCAGCTCACAGAAAGTGCTCGCCC
TGTTTTAAAAGGCGAAGTGCCGCTTGAATTAGCGATGCCACGCATTTCATCCATTAATAAAATTGTGCATACGTCTCATA
AAAATACGGTAGTAAATTACGATAAAGATCTGTTTGCTCGTTTGCGTTTCTTAAGGAAGCAACTTGCGGATAAAGAAAAT
ATTCCACCTTATATTGTCTTTAACGATGCAACGTTACAGGAAATGGCGCAATATATGCCAACAAGTAATATTGAGATGTT
ACAAATTAATGGGGTGGGTGCGATCAAATTGGAACGCTTTGGGCAGCCGTTTATGGCATTGATTCGAGAGCACAAAGCAA
TTTTAGAAAAGGCAGAAAAAAGATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(230-334)

RecQ zinc-binding (RecQ_Zn_bind)

(348-409)

DEAD/DEAH box helicase (DEAD)

(34-190)

HRDC domain (HRDC)

(542-608)

RQC domain (RQC)

(411-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.333

96.618

0.38