Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PCP80_RS17875 Genome accession   NZ_CP115280
Coordinates   3821404..3822039 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain F010     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3816404..3827039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP80_RS17860 (PCP80_17875) - 3817122..3818366 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  PCP80_RS17865 (PCP80_17880) - 3818442..3818975 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PCP80_RS17870 (PCP80_17885) comA 3819106..3821331 (+) 2226 WP_023100928.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PCP80_RS17875 (PCP80_17890) exbB 3821404..3822039 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PCP80_RS17880 (PCP80_17895) - 3822036..3822476 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PCP80_RS17885 (PCP80_17900) lpxK 3822476..3823474 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  PCP80_RS17890 (PCP80_17905) - 3823512..3823697 (+) 186 WP_003091157.1 Trm112 family protein -
  PCP80_RS17895 (PCP80_17910) kdsB 3823697..3824461 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCP80_RS17900 (PCP80_17915) - 3824461..3824925 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  PCP80_RS17905 (PCP80_17920) murB 3824922..3825941 (+) 1020 WP_021265002.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=771217 PCP80_RS17875 WP_003091163.1 3821404..3822039(+) (exbB) [Pseudomonas aeruginosa strain F010]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=771217 PCP80_RS17875 WP_003091163.1 3821404..3822039(+) (exbB) [Pseudomonas aeruginosa strain F010]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81