Detailed information    

insolico Bioinformatically predicted

Overview


Name   fimV   Type   Machinery gene
Locus tag   PCP87_RS00265 Genome accession   NZ_CP115277
Coordinates   35199..37958 (-) Length   919 a.a.
NCBI ID   WP_003163304.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F012     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 231..37958 35199..37958 within 0


Gene organization within MGE regions


Location: 231..37958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP87_RS00010 (PCP87_00010) - 231..776 (-) 546 WP_050157683.1 hypothetical protein -
  PCP87_RS00015 (PCP87_00015) - 776..1186 (-) 411 WP_033991823.1 hypothetical protein -
  PCP87_RS00020 (PCP87_00020) - 1189..2886 (-) 1698 WP_126122946.1 hypothetical protein -
  PCP87_RS00025 (PCP87_00025) - 2886..3407 (-) 522 WP_029528986.1 hypothetical protein -
  PCP87_RS00030 (PCP87_00030) - 3447..5930 (-) 2484 WP_023465052.1 tape measure protein -
  PCP87_RS00035 (PCP87_00035) - 6033..6335 (-) 303 WP_010791966.1 hypothetical protein -
  PCP87_RS00040 (PCP87_00040) - 6400..6927 (-) 528 WP_071535696.1 DUF4124 domain-containing protein -
  PCP87_RS00045 (PCP87_00045) - 6999..7520 (-) 522 WP_050397059.1 GspH/FimT family pseudopilin -
  PCP87_RS00050 (PCP87_00050) - 7602..8354 (-) 753 WP_010791967.1 hypothetical protein -
  PCP87_RS00055 (PCP87_00055) - 8356..8550 (-) 195 WP_010791968.1 DUF7210 family protein -
  PCP87_RS00060 (PCP87_00060) - 8554..9024 (-) 471 WP_010791969.1 hypothetical protein -
  PCP87_RS00065 (PCP87_00065) - 9021..9350 (-) 330 WP_010791970.1 hypothetical protein -
  PCP87_RS00070 (PCP87_00070) - 9347..9664 (-) 318 WP_003129701.1 DUF2190 family protein -
  PCP87_RS00075 (PCP87_00075) - 9731..11812 (-) 2082 WP_033865214.1 ClpP-like prohead protease/major capsid protein fusion protein -
  PCP87_RS00080 (PCP87_00080) - 11784..13430 (-) 1647 WP_019486499.1 phage portal protein -
  PCP87_RS00085 (PCP87_00085) - 13430..13645 (-) 216 WP_003159069.1 hypothetical protein -
  PCP87_RS00090 (PCP87_00090) - 13636..15600 (-) 1965 WP_058179733.1 phage terminase large subunit family protein -
  PCP87_RS00095 (PCP87_00095) - 15572..16117 (-) 546 WP_010791974.1 terminase small subunit -
  PCP87_RS00100 (PCP87_00100) - 16237..16980 (-) 744 WP_003159066.1 hypothetical protein -
  PCP87_RS00105 (PCP87_00105) - 16977..17447 (-) 471 WP_096222223.1 lysis system i-spanin subunit Rz -
  PCP87_RS32145 - 17447..18001 (-) 555 WP_071537640.1 NUMOD4 motif-containing HNH endonuclease -
  PCP87_RS00110 (PCP87_00110) - 18001..18618 (-) 618 WP_096222224.1 glycoside hydrolase family 19 protein -
  PCP87_RS00115 (PCP87_00115) - 18615..18947 (-) 333 WP_004353177.1 phage holin, lambda family -
  PCP87_RS00120 (PCP87_00120) - 19032..19559 (-) 528 WP_025986887.1 Rha family transcriptional regulator -
  PCP87_RS00125 (PCP87_00125) - 20098..20487 (-) 390 WP_023124656.1 antiterminator Q family protein -
  PCP87_RS00130 (PCP87_00130) - 20484..20762 (-) 279 WP_015648203.1 hypothetical protein -
  PCP87_RS00135 (PCP87_00135) - 20759..22155 (-) 1397 Protein_27 replicative DNA helicase -
  PCP87_RS00140 (PCP87_00140) - 22152..22967 (-) 816 WP_033983184.1 ATP-binding protein -
  PCP87_RS00145 (PCP87_00145) - 22948..23787 (-) 840 WP_023086959.1 helix-turn-helix domain-containing protein -
  PCP87_RS00150 (PCP87_00150) - 23784..24014 (-) 231 WP_010791987.1 hypothetical protein -
  PCP87_RS00155 (PCP87_00155) - 24011..24775 (-) 765 WP_033983181.1 Rha family transcriptional regulator -
  PCP87_RS00160 (PCP87_00160) - 24772..25005 (-) 234 WP_033955708.1 hypothetical protein -
  PCP87_RS00165 (PCP87_00165) - 24998..25264 (-) 267 WP_223882064.1 hypothetical protein -
  PCP87_RS00170 (PCP87_00170) - 25273..25581 (-) 309 WP_055327987.1 hypothetical protein -
  PCP87_RS00175 (PCP87_00175) - 25578..25865 (-) 288 WP_003119033.1 DUF3077 domain-containing protein -
  PCP87_RS00180 (PCP87_00180) - 25862..26173 (-) 312 WP_019486514.1 hypothetical protein -
  PCP87_RS00185 (PCP87_00185) - 26585..26920 (-) 336 WP_058164184.1 hypothetical protein -
  PCP87_RS00190 (PCP87_00190) - 27033..27881 (+) 849 WP_070410934.1 LexA family transcriptional regulator -
  PCP87_RS00195 (PCP87_00195) - 28002..28391 (+) 390 WP_034063245.1 LuxR C-terminal-related transcriptional regulator -
  PCP87_RS00200 (PCP87_00200) - 28394..28627 (+) 234 WP_021205288.1 hypothetical protein -
  PCP87_RS00205 (PCP87_00205) - 29147..29413 (+) 267 WP_021205287.1 hypothetical protein -
  PCP87_RS00210 (PCP87_00210) - 29410..30177 (+) 768 WP_021205286.1 Rha family transcriptional regulator -
  PCP87_RS00215 (PCP87_00215) - 30257..30487 (+) 231 WP_031637080.1 Arc family DNA-binding protein -
  PCP87_RS00220 (PCP87_00220) - 30490..31368 (+) 879 WP_169311278.1 hypothetical protein -
  PCP87_RS00225 (PCP87_00225) - 31365..31892 (+) 528 WP_023083761.1 hypothetical protein -
  PCP87_RS00230 (PCP87_00230) - 32005..32196 (+) 192 WP_050159539.1 hypothetical protein -
  PCP87_RS00235 (PCP87_00235) - 32193..32372 (+) 180 WP_034014242.1 hypothetical protein -
  PCP87_RS00240 (PCP87_00240) - 32369..32614 (+) 246 WP_034014243.1 hypothetical protein -
  PCP87_RS00245 (PCP87_00245) - 32611..33450 (+) 840 WP_051488605.1 hypothetical protein -
  PCP87_RS00250 (PCP87_00250) - 33453..33776 (+) 324 WP_034014244.1 ClpX C4-type zinc finger protein -
  PCP87_RS00255 (PCP87_00255) - 33760..34002 (+) 243 WP_003158850.1 DUF4224 domain-containing protein -
  PCP87_RS00260 (PCP87_00260) - 34002..35051 (+) 1050 WP_042929192.1 tyrosine-type recombinase/integrase -
  PCP87_RS00265 (PCP87_00265) fimV 35199..37958 (-) 2760 WP_003163304.1 motility hub landmark protein FimV Machinery gene

Sequence


Protein


Download         Length: 919 a.a.        Molecular weight: 96929.17 Da        Isoelectric Point: 3.9481

>NTDB_id=771122 PCP87_RS00265 WP_003163304.1 35199..37958(-) (fimV) [Pseudomonas aeruginosa strain F012]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADTGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTPADKPVDDL
DFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSL
ADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=771122 PCP87_RS00265 WP_003163304.1 35199..37958(-) (fimV) [Pseudomonas aeruginosa strain F012]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAGCTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAATCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGAAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGACAGCACTCGCCGCGAGAACGAAGAACTGCAGAGTCGCATGCAGGATCTGCAGAGCCAGTT
GGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCGGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCTGCTGCGGCAGCGCCGACTCCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAGCAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATACCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGTCG
CTCCGCAGGTCGAGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTATCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAG
GACGAGCTGGATAGCTTCAGCCTTGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA
GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCG
GGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCCCGGCGGATAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGA
TCTCGACGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAAGTGCCCGCCGCGGCGCCTG
CCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCT
CCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCT
CGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

99.674

100

0.997