Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP38_RS22955 Genome accession   NZ_CP115275
Coordinates   5008610..5009167 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5003610..5014167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP38_RS22940 (PCP38_22940) pilY1 5003702..5007193 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PCP38_RS22945 (PCP38_22945) pilX 5007205..5007792 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP38_RS22950 (PCP38_22950) pilW 5007789..5008613 (-) 825 WP_004352757.1 type 4a pilus minor pilin PilW -
  PCP38_RS22955 (PCP38_22955) pilV 5008610..5009167 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP38_RS22960 (PCP38_22960) - 5009158..5009664 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP38_RS22965 (PCP38_22965) - 5009770..5010279 (-) 510 WP_003161431.1 GspH/FimT family pseudopilin -
  PCP38_RS22970 (PCP38_22970) thiO 5010414..5011508 (+) 1095 WP_003119424.1 glycine oxidase ThiO -
  PCP38_RS22975 (PCP38_22975) pilR 5011554..5012891 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=771076 PCP38_RS22955 WP_003119423.1 5008610..5009167(-) (pilV) [Pseudomonas aeruginosa strain F014]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=771076 PCP38_RS22955 WP_003119423.1 5008610..5009167(-) (pilV) [Pseudomonas aeruginosa strain F014]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995