Detailed information NTG0770901

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQX48_RS21250
• Genome accession: NZ_CP127123
• Coordinates: 4537231..4538235 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Ned_5_Control
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4532231..4543235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQX48_RS21235 (QQX48_21235)	-	4532714..4533721 (+)	1008	WP_019682219.1	TolB family protein	-
QQX48_RS21240 (QQX48_21240)	mutS	4533847..4536414 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
QQX48_RS21245 (QQX48_21245)	fdxA	4536481..4536804 (+)	324	WP_003092272.1	ferredoxin FdxA	-
QQX48_RS21250 (QQX48_21250)	rpoS	4537231..4538235 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QQX48_RS21255 (QQX48_21255)	-	4538340..4539233 (-)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
QQX48_RS21260 (QQX48_21260)	-	4539279..4539914 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QQX48_RS21265 (QQX48_21265)	surE	4539947..4540696 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QQX48_RS21270 (QQX48_21270)	truD	4540684..4541751 (-)	1068	WP_023085981.1	tRNA pseudouridine(13) synthase TruD	-
QQX48_RS21275 (QQX48_21275)	ispF	4541748..4542221 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQX48_RS21280 (QQX48_21280)	fghA	4542292..4543143 (-)	852	WP_003117489.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=770901 QQX48_RS21250 WP_003113871.1 4537231..4538235(-) (rpoS) [Pseudomonas aeruginosa strain Ned_5_Control]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=770901 QQX48_RS21250 WP_003113871.1 4537231..4538235(-) (rpoS) [Pseudomonas aeruginosa strain Ned_5_Control]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTATGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653