Detailed information NTG0770800

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQX47_RS21300
• Genome accession: NZ_CP127122
• Coordinates: 4548714..4549718 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Ned_5_BIM
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4543714..4554718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQX47_RS21285 (QQX47_21285)	-	4544197..4545204 (+)	1008	WP_019682219.1	TolB family protein	-
QQX47_RS21290 (QQX47_21290)	mutS	4545330..4547897 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
QQX47_RS21295 (QQX47_21295)	fdxA	4547964..4548287 (+)	324	WP_003092272.1	ferredoxin FdxA	-
QQX47_RS21300 (QQX47_21300)	rpoS	4548714..4549718 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QQX47_RS21305 (QQX47_21305)	-	4549823..4550716 (-)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
QQX47_RS21310 (QQX47_21310)	-	4550762..4551397 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QQX47_RS21315 (QQX47_21315)	surE	4551430..4552179 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QQX47_RS21320 (QQX47_21320)	truD	4552167..4553234 (-)	1068	WP_023085981.1	tRNA pseudouridine(13) synthase TruD	-
QQX47_RS21325 (QQX47_21325)	ispF	4553231..4553704 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQX47_RS21330 (QQX47_21330)	fghA	4553775..4554626 (-)	852	WP_003117489.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=770800 QQX47_RS21300 WP_003113871.1 4548714..4549718(-) (rpoS) [Pseudomonas aeruginosa strain Ned_5_BIM]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=770800 QQX47_RS21300 WP_003113871.1 4548714..4549718(-) (rpoS) [Pseudomonas aeruginosa strain Ned_5_BIM]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTATGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653