Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QQX47_RS18920 Genome accession   NZ_CP127122
Coordinates   4046215..4046544 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain Ned_5_BIM     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4041215..4051544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX47_RS18905 (QQX47_18905) uvrB 4042602..4044614 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  QQX47_RS18910 (QQX47_18910) - 4044802..4045998 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  QQX47_RS18920 (QQX47_18920) comEA/comE1 4046215..4046544 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  QQX47_RS18925 (QQX47_18925) - 4046735..4048732 (-) 1998 WP_408588236.1 polysaccharide biosynthesis protein -
  QQX47_RS18930 (QQX47_18930) - 4048863..4049888 (-) 1026 WP_004350972.1 glycosyltransferase family 4 protein -
  QQX47_RS18935 (QQX47_18935) - 4049885..4050844 (-) 960 WP_371048784.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=770795 QQX47_RS18920 WP_003104586.1 4046215..4046544(-) (comEA/comE1) [Pseudomonas aeruginosa strain Ned_5_BIM]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=770795 QQX47_RS18920 WP_003104586.1 4046215..4046544(-) (comEA/comE1) [Pseudomonas aeruginosa strain Ned_5_BIM]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385