Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP74_RS08670 Genome accession   NZ_CP115263
Coordinates   1876519..1877076 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1871519..1882076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP74_RS08655 (PCP74_08660) pilY1 1871611..1875102 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PCP74_RS08660 (PCP74_08665) pilX 1875114..1875701 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP74_RS08665 (PCP74_08670) pilW 1875698..1876522 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP74_RS08670 (PCP74_08675) pilV 1876519..1877076 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP74_RS08675 (PCP74_08680) - 1877067..1877573 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP74_RS08680 (PCP74_08685) - 1877679..1878188 (-) 510 WP_017002065.1 GspH/FimT family pseudopilin -
  PCP74_RS08685 (PCP74_08690) thiO 1878323..1879417 (+) 1095 WP_023108762.1 glycine oxidase ThiO -
  PCP74_RS08690 (PCP74_08695) pilR 1879463..1880800 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=770758 PCP74_RS08670 WP_003119423.1 1876519..1877076(-) (pilV) [Pseudomonas aeruginosa strain F023]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=770758 PCP74_RS08670 WP_003119423.1 1876519..1877076(-) (pilV) [Pseudomonas aeruginosa strain F023]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995