Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP26_RS27855 Genome accession   NZ_CP115260
Coordinates   5854716..5855273 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5849716..5860273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP26_RS27835 (PCP26_27820) pilR 5850992..5852329 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PCP26_RS27840 (PCP26_27825) thiO 5852375..5853469 (-) 1095 WP_003134931.1 glycine oxidase ThiO -
  PCP26_RS27845 (PCP26_27830) - 5853604..5854113 (+) 510 WP_003134932.1 GspH/FimT family pseudopilin -
  PCP26_RS27850 (PCP26_27835) - 5854219..5854725 (+) 507 WP_003134935.1 GspH/FimT family pseudopilin -
  PCP26_RS27855 (PCP26_27840) pilV 5854716..5855273 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  PCP26_RS27860 (PCP26_27845) pilW 5855270..5856094 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP26_RS27865 (PCP26_27850) pilX 5856091..5856678 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PCP26_RS27870 (PCP26_27855) pilY1 5856690..5860175 (+) 3486 WP_151165179.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=770670 PCP26_RS27855 WP_003110422.1 5854716..5855273(+) (pilV) [Pseudomonas aeruginosa strain F026]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=770670 PCP26_RS27855 WP_003110422.1 5854716..5855273(+) (pilV) [Pseudomonas aeruginosa strain F026]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984