Detailed information NTG0770651

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQX49_RS06745
• Genome accession: NZ_CP127121
• Coordinates: 1442943..1443947 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain USA_2_Control
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1437943..1448947

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQX49_RS06715 (QQX49_06715)	fghA	1438035..1438886 (+)	852	WP_023115121.1	S-formylglutathione hydrolase	-
QQX49_RS06720 (QQX49_06720)	ispF	1438957..1439430 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQX49_RS06725 (QQX49_06725)	truD	1439427..1440494 (+)	1068	WP_023115122.1	tRNA pseudouridine(13) synthase TruD	-
QQX49_RS06730 (QQX49_06730)	surE	1440482..1441231 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QQX49_RS06735 (QQX49_06735)	-	1441264..1441899 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QQX49_RS06740 (QQX49_06740)	-	1441945..1442838 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
QQX49_RS06745 (QQX49_06745)	rpoS	1442943..1443947 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QQX49_RS06750 (QQX49_06750)	fdxA	1444374..1444697 (-)	324	WP_003092272.1	ferredoxin FdxA	-
QQX49_RS06755 (QQX49_06755)	mutS	1444764..1447331 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
QQX49_RS06760 (QQX49_06760)	-	1447457..1448464 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=770651 QQX49_RS06745 WP_003113871.1 1442943..1443947(+) (rpoS) [Pseudomonas aeruginosa strain USA_2_Control]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=770651 QQX49_RS06745 WP_003113871.1 1442943..1443947(+) (rpoS) [Pseudomonas aeruginosa strain USA_2_Control]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653