Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP92_RS01425 Genome accession   NZ_CP115259
Coordinates   309170..309694 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain F027     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304170..314694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP92_RS01405 (PCP92_01405) pilR 305432..306769 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PCP92_RS01410 (PCP92_01410) thiO 306815..307909 (-) 1095 WP_023103512.1 glycine oxidase ThiO -
  PCP92_RS01415 (PCP92_01415) - 308049..308549 (+) 501 WP_003116259.1 GspH/FimT family pseudopilin -
  PCP92_RS01420 (PCP92_01420) - 308672..309160 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  PCP92_RS01425 (PCP92_01425) pilV 309170..309694 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  PCP92_RS01430 (PCP92_01430) - 309703..310518 (+) 816 WP_003116262.1 PilW family protein -
  PCP92_RS01435 (PCP92_01435) - 310515..311120 (+) 606 WP_003116263.1 pilus assembly PilX family protein -
  PCP92_RS01440 (PCP92_01440) - 311134..314610 (+) 3477 WP_003116264.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=770616 PCP92_RS01425 WP_003116261.1 309170..309694(+) (pilV) [Pseudomonas aeruginosa strain F027]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=770616 PCP92_RS01425 WP_003116261.1 309170..309694(+) (pilV) [Pseudomonas aeruginosa strain F027]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598