Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP63_RS24995 Genome accession   NZ_CP115258
Coordinates   5445945..5446502 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F028     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5440945..5451502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP63_RS24980 (PCP63_24975) pilY1 5441043..5444528 (-) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -
  PCP63_RS24985 (PCP63_24980) pilX 5444540..5445127 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PCP63_RS24990 (PCP63_24985) pilW 5445124..5445948 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP63_RS24995 (PCP63_24990) pilV 5445945..5446502 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP63_RS25000 (PCP63_24995) - 5446493..5446999 (-) 507 WP_003094696.1 GspH/FimT family pseudopilin -
  PCP63_RS25005 (PCP63_25000) - 5447105..5447614 (-) 510 WP_034037343.1 GspH/FimT family pseudopilin -
  PCP63_RS25010 (PCP63_25005) thiO 5447749..5448843 (+) 1095 WP_094009641.1 glycine oxidase ThiO -
  PCP63_RS25015 (PCP63_25010) pilR 5448889..5450226 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=770602 PCP63_RS24995 WP_003119423.1 5445945..5446502(-) (pilV) [Pseudomonas aeruginosa strain F028]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=770602 PCP63_RS24995 WP_003119423.1 5445945..5446502(-) (pilV) [Pseudomonas aeruginosa strain F028]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995