Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP47_RS21970 Genome accession   NZ_CP115257
Coordinates   4756629..4757186 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F029     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4751629..4762186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP47_RS21950 (PCP47_21940) pilR 4752905..4754242 (+) 1338 WP_023088571.1 two-component system response regulator PilR Regulator
  PCP47_RS21955 (PCP47_21945) thiO 4754288..4755382 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  PCP47_RS21960 (PCP47_21950) - 4755517..4756026 (+) 510 WP_023088572.1 GspH/FimT family pseudopilin -
  PCP47_RS21965 (PCP47_21955) - 4756132..4756638 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP47_RS21970 (PCP47_21960) pilV 4756629..4757186 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP47_RS21975 (PCP47_21965) pilW 4757183..4758007 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP47_RS21980 (PCP47_21970) pilX 4758004..4758591 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  PCP47_RS21985 (PCP47_21975) pilY1 4758603..4762094 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=770564 PCP47_RS21970 WP_003119423.1 4756629..4757186(+) (pilV) [Pseudomonas aeruginosa strain F029]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=770564 PCP47_RS21970 WP_003119423.1 4756629..4757186(+) (pilV) [Pseudomonas aeruginosa strain F029]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995