Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QQX51_RS09180 Genome accession   NZ_CP127120
Coordinates   1962871..1963200 (+) Length   109 a.a.
NCBI ID   WP_023115163.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain USA_2_BIM     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1957871..1968200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX51_RS09165 (QQX51_09155) - 1958162..1959367 (+) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  QQX51_RS09170 (QQX51_09160) - 1959560..1960588 (+) 1029 WP_003116434.1 glycosyltransferase family 4 protein -
  QQX51_RS09175 (QQX51_09165) - 1960683..1962680 (+) 1998 WP_408585760.1 polysaccharide biosynthesis protein -
  QQX51_RS09180 (QQX51_09170) comEA/comE1 1962871..1963200 (+) 330 WP_023115163.1 ComEA family DNA-binding protein Machinery gene
  QQX51_RS09190 (QQX51_09180) - 1963417..1964613 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  QQX51_RS09195 (QQX51_09185) uvrB 1964801..1966813 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11293.27 Da        Isoelectric Point: 9.1462

>NTDB_id=770556 QQX51_RS09180 WP_023115163.1 1962871..1963200(+) (comEA/comE1) [Pseudomonas aeruginosa strain USA_2_BIM]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDAAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=770556 QQX51_RS09180 WP_023115163.1 1962871..1963200(+) (comEA/comE1) [Pseudomonas aeruginosa strain USA_2_BIM]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
CGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.346

95.413

0.394