Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP13_RS03530 Genome accession   NZ_CP115256
Coordinates   730674..731231 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F030     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 725674..736231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP13_RS03510 (PCP13_03510) pilR 726950..728287 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PCP13_RS03515 (PCP13_03515) thiO 728333..729427 (-) 1095 WP_094009641.1 glycine oxidase ThiO -
  PCP13_RS03520 (PCP13_03520) - 729562..730071 (+) 510 WP_094009627.1 GspH/FimT family pseudopilin -
  PCP13_RS03525 (PCP13_03525) - 730177..730683 (+) 507 WP_003094696.1 GspH/FimT family pseudopilin -
  PCP13_RS03530 (PCP13_03530) pilV 730674..731231 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  PCP13_RS03535 (PCP13_03535) pilW 731228..732052 (+) 825 WP_058154737.1 type 4a pilus minor pilin PilW -
  PCP13_RS03540 (PCP13_03540) pilX 732049..732636 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP13_RS03545 (PCP13_03545) pilY1 732648..736133 (+) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=770515 PCP13_RS03530 WP_003110422.1 730674..731231(+) (pilV) [Pseudomonas aeruginosa strain F030]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=770515 PCP13_RS03530 WP_003110422.1 730674..731231(+) (pilV) [Pseudomonas aeruginosa strain F030]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGTAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984