Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PCP33_RS28050 Genome accession   NZ_CP115252
Coordinates   6080625..6081962 (+) Length   445 a.a.
NCBI ID   WP_328987243.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F034     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6075625..6086962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP33_RS28025 (PCP33_28030) pgeF 6075768..6076496 (-) 729 WP_003112833.1 peptidoglycan editing factor PgeF -
  PCP33_RS28030 (PCP33_28035) rluD 6076493..6077455 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCP33_RS28035 (PCP33_28040) - 6077601..6078626 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  PCP33_RS28040 (PCP33_28045) - 6078783..6079028 (+) 246 WP_003102591.1 PP0621 family protein -
  PCP33_RS28045 (PCP33_28050) pilS 6079018..6080610 (+) 1593 WP_003123394.1 two-component system sensor histidine kinase PilS Regulator
  PCP33_RS28050 (PCP33_28055) pilR 6080625..6081962 (+) 1338 WP_328987243.1 two-component system response regulator PilR Regulator
  PCP33_RS28055 (PCP33_28060) thiO 6082008..6083102 (-) 1095 WP_023122775.1 glycine oxidase ThiO -
  PCP33_RS28060 (PCP33_28065) - 6083242..6083742 (+) 501 WP_016562346.1 GspH/FimT family pseudopilin -
  PCP33_RS28065 (PCP33_28070) - 6083865..6084353 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  PCP33_RS28070 (PCP33_28075) pilV 6084363..6084887 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  PCP33_RS28075 (PCP33_28080) - 6084896..6085711 (+) 816 WP_016562347.1 PilW family protein -
  PCP33_RS28080 (PCP33_28085) - 6085708..6086313 (+) 606 WP_003116263.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49727.02 Da        Isoelectric Point: 5.8654

>NTDB_id=770402 PCP33_RS28050 WP_328987243.1 6080625..6081962(+) (pilR) [Pseudomonas aeruginosa strain F034]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDISLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=770402 PCP33_RS28050 WP_328987243.1 6080625..6081962(+) (pilR) [Pseudomonas aeruginosa strain F034]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAAACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCTCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384