Detailed information NTG0077037

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LPH31_RS21705
• Genome accession: NZ_AP025220
• Coordinates: 4489300..4490325 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 2017.11.01CC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4484300..4495325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPH31_RS21685 (VEGS20_A41940)	metJ	4485361..4485678 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LPH31_RS21690 (VEGS20_A41950)	yiiX	4485862..4486470 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LPH31_RS21695 (VEGS20_A41960)	rpmE	4486531..4486743 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LPH31_RS21700 (VEGS20_A41970)	priA	4486946..4489144 (+)	2199	WP_001355569.1	primosomal protein N'	Machinery gene
LPH31_RS21705 (VEGS20_A41980)	cytR	4489300..4490325 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LPH31_RS21710 (VEGS20_A41990)	ftsN	4490417..4491376 (+)	960	WP_000068828.1	cell division protein FtsN	-
LPH31_RS21715 (VEGS20_A42000)	hslV	4491469..4491999 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LPH31_RS21720 (VEGS20_A42010)	hslU	4492009..4493340 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LPH31_RS21725 (VEGS20_A42020)	menA	4493407..4494333 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LPH31_RS21730 (VEGS20_A42030)	rraA	4494426..4494911 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LPH31_RS21735 (VEGS20_A42040)	zapB	4494996..4495241 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=77037 LPH31_RS21705 WP_000644904.1 4489300..4490325(+) (cytR) [Escherichia coli strain 2017.11.01CC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=77037 LPH31_RS21705 WP_000644904.1 4489300..4490325(+) (cytR) [Escherichia coli strain 2017.11.01CC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628