Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QMY48_RS12025 Genome accession   NZ_CP127035
Coordinates   2418291..2418896 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain TW10573     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2413291..2423896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY48_RS12005 (QMY48_02366) aes 2413328..2414287 (+) 960 WP_000801846.1 acetyl esterase -
  QMY48_RS12010 (QMY48_02367) hemH 2414284..2415246 (-) 963 WP_001250088.1 ferrochelatase -
  QMY48_RS12015 (QMY48_02368) adk 2415482..2416126 (-) 645 WP_001716241.1 adenylate kinase -
  QMY48_RS12020 (QMY48_02369) htpG 2416307..2418181 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  QMY48_RS12025 (QMY48_02370) recR 2418291..2418896 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QMY48_RS12030 (QMY48_02371) ybaB 2418896..2419225 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QMY48_RS12035 (QMY48_02372) dnaX 2419278..2421209 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QMY48_RS12040 (QMY48_02373) apt 2421338..2421889 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QMY48_RS12045 (QMY48_02374) ybaN 2422042..2422419 (-) 378 WP_001188905.1 DUF454 family protein -
  QMY48_RS12050 (QMY48_02375) priC 2422489..2423016 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QMY48_RS12055 (QMY48_02376) rsmS 2423030..2423191 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=770327 QMY48_RS12025 WP_001195025.1 2418291..2418896(-) (recR) [Escherichia coli strain TW10573]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=770327 QMY48_RS12025 WP_001195025.1 2418291..2418896(-) (recR) [Escherichia coli strain TW10573]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443