Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QMY48_RS09385 Genome accession   NZ_CP127035
Coordinates   1853030..1853659 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TW10573     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1848030..1858659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY48_RS09370 (QMY48_01842) helD 1848272..1850326 (-) 2055 WP_001297106.1 DNA helicase IV -
  QMY48_RS09375 (QMY48_01843) yccF 1850449..1850895 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QMY48_RS09380 (QMY48_01844) yccS 1850905..1853067 (+) 2163 WP_000875015.1 YccS family putative transporter -
  QMY48_RS09385 (QMY48_01845) sxy/tfoX 1853030..1853659 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QMY48_RS09390 (QMY48_01846) sulA 1853878..1854387 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QMY48_RS09395 (QMY48_01847) ompA 1854744..1855796 (+) 1053 WP_000750419.1 porin OmpA -
  QMY48_RS09400 (QMY48_01848) matP 1855872..1856324 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QMY48_RS09405 (QMY48_01849) ycbZ 1856510..1858270 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=770320 QMY48_RS09385 WP_000839153.1 1853030..1853659(-) (sxy/tfoX) [Escherichia coli strain TW10573]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=770320 QMY48_RS09385 WP_000839153.1 1853030..1853659(-) (sxy/tfoX) [Escherichia coli strain TW10573]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1