Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QMY50_RS20190 Genome accession   NZ_CP127034
Coordinates   3879208..3879813 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain TW10690     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3874208..3884813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY50_RS20170 (QMY50_03950) aes 3874349..3875308 (+) 960 WP_000801838.1 acetyl esterase -
  QMY50_RS20175 (QMY50_03951) hemH 3875305..3876267 (-) 963 WP_001250120.1 ferrochelatase -
  QMY50_RS20180 (QMY50_03952) adk 3876399..3877043 (-) 645 WP_001345715.1 adenylate kinase -
  QMY50_RS20185 (QMY50_03953) htpG 3877224..3879098 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QMY50_RS20190 (QMY50_03954) recR 3879208..3879813 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QMY50_RS20195 (QMY50_03955) ybaB 3879813..3880142 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QMY50_RS20200 (QMY50_03956) dnaX 3880195..3882126 (-) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  QMY50_RS20205 (QMY50_03957) apt 3882255..3882806 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QMY50_RS20210 (QMY50_03958) ybaN 3882959..3883336 (-) 378 WP_001188905.1 DUF454 family protein -
  QMY50_RS20215 (QMY50_03959) priC 3883406..3883933 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QMY50_RS20220 (QMY50_03960) rsmS 3883947..3884108 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=770288 QMY50_RS20190 WP_001195025.1 3879208..3879813(-) (recR) [Escherichia coli strain TW10690]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=770288 QMY50_RS20190 WP_001195025.1 3879208..3879813(-) (recR) [Escherichia coli strain TW10690]
ATGCAAACCAGTCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443