Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QMY50_RS08935 Genome accession   NZ_CP127034
Coordinates   1572521..1573513 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain TW10690     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567521..1578513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY50_RS08910 (QMY50_01747) ygbN 1568175..1569539 (+) 1365 WP_000104429.1 GntP family transporter -
  QMY50_RS08915 (QMY50_01748) - 1569579..1569815 (-) 237 WP_000562991.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  QMY50_RS08920 (QMY50_01749) - 1569826..1571253 (-) 1428 WP_000863194.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  QMY50_RS08925 (QMY50_01750) - 1571253..1571846 (-) 594 WP_000767707.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  QMY50_RS08930 (QMY50_01751) - 1571993..1572400 (+) 408 WP_001208070.1 MarR family winged helix-turn-helix transcriptional regulator -
  QMY50_RS08935 (QMY50_01752) rpoS 1572521..1573513 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  QMY50_RS08940 (QMY50_01753) nlpD 1573576..1574670 (-) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  QMY50_RS08945 (QMY50_01754) pcm 1574855..1575481 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  QMY50_RS08950 (QMY50_01755) surE 1575475..1576236 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  QMY50_RS08955 (QMY50_01756) truD 1576217..1577266 (-) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  QMY50_RS08960 (QMY50_01757) ispF 1577263..1577742 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QMY50_RS08965 (QMY50_01758) ispD 1577742..1578452 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=770260 QMY50_RS08935 WP_000081550.1 1572521..1573513(-) (rpoS) [Escherichia coli strain TW10690]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=770260 QMY50_RS08935 WP_000081550.1 1572521..1573513(-) (rpoS) [Escherichia coli strain TW10690]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715