Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QMY50_RS08570 Genome accession   NZ_CP127034
Coordinates   1502115..1502630 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain TW10690     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1497115..1507630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY50_RS08545 (QMY50_01671) ygaZ 1497514..1498251 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  QMY50_RS08550 (QMY50_01672) ygaH 1498241..1498576 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  QMY50_RS08555 (QMY50_01673) emrR 1498667..1499197 (+) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QMY50_RS08560 (QMY50_01674) emrA 1499324..1500496 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QMY50_RS08565 (QMY50_01675) emrB 1500513..1502051 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QMY50_RS08570 (QMY50_01676) luxS 1502115..1502630 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QMY50_RS08575 (QMY50_01677) gshA 1502780..1504336 (-) 1557 WP_315682325.1 glutamate--cysteine ligase -
  QMY50_RS08580 (QMY50_01678) yqaA 1504409..1504837 (-) 429 WP_001287457.1 YqaA family protein -
  QMY50_RS08585 (QMY50_01679) yqaB 1504834..1505400 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QMY50_RS08615 (QMY50_01686) csrA 1506858..1507043 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=770257 QMY50_RS08570 WP_001130211.1 1502115..1502630(-) (luxS) [Escherichia coli strain TW10690]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=770257 QMY50_RS08570 WP_001130211.1 1502115..1502630(-) (luxS) [Escherichia coli strain TW10690]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731