Detailed information NTG0770148

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP50_RS09450
• Genome accession: NZ_CP115245
• Coordinates: 2027763..2028635 (-)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F041
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2022763..2033635

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP50_RS09405 (PCP50_09410)	-	2023624..2023794 (-)	171	WP_003094672.1	DUF3094 family protein	-
PCP50_RS09410 (PCP50_09415)	-	2023820..2024269 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
PCP50_RS09415 (PCP50_09420)	-	2024266..2024895 (-)	630	WP_073651877.1	DUF1780 domain-containing protein	-
PCP50_RS09420 (PCP50_09425)	-	2025028..2025453 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PCP50_RS09425 (PCP50_09430)	-	2025450..2025920 (+)	471	WP_003103866.1	hypothetical protein	-
PCP50_RS09430 (PCP50_09435)	-	2025917..2026606 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PCP50_RS09435 (PCP50_09440)	-	2026712..2026921 (+)	210	WP_003094660.1	hypothetical protein	-
PCP50_RS09440 (PCP50_09445)	yacG	2026958..2027158 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP50_RS09445 (PCP50_09450)	coaE	2027155..2027766 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
PCP50_RS09450 (PCP50_09455)	pilD	2027763..2028635 (-)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP50_RS09455 (PCP50_09460)	pilC	2028636..2029853 (-)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
PCP50_RS09460 (PCP50_09465)	pilB	2029857..2031557 (-)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP50_RS09465 (PCP50_09470)	-	2031788..2032252 (+)	465	WP_003122079.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=770148 PCP50_RS09450 WP_023084740.1 2027763..2028635(-) (pilD) [Pseudomonas aeruginosa strain F041]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=770148 PCP50_RS09450 WP_023084740.1 2027763..2028635(-) (pilD) [Pseudomonas aeruginosa strain F041]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472