Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP12_RS09385 Genome accession   NZ_CP115242
Coordinates   2015561..2016118 (-) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain F044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2010561..2021118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP12_RS09370 (PCP12_09370) pilY1 2010653..2014144 (-) 3492 WP_023114843.1 type 4a pilus biogenesis protein PilY1 -
  PCP12_RS09375 (PCP12_09375) pilX 2014156..2014743 (-) 588 WP_023114842.1 type 4a pilus minor pilin PilX -
  PCP12_RS09380 (PCP12_09380) pilW 2014740..2015564 (-) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  PCP12_RS09385 (PCP12_09385) pilV 2015561..2016118 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PCP12_RS09390 (PCP12_09390) - 2016109..2016615 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP12_RS09395 (PCP12_09395) - 2016721..2017230 (-) 510 WP_017002065.1 GspH/FimT family pseudopilin -
  PCP12_RS09400 (PCP12_09400) thiO 2017365..2018459 (+) 1095 WP_023114840.1 glycine oxidase ThiO -
  PCP12_RS09405 (PCP12_09405) pilR 2018505..2019842 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=770042 PCP12_RS09385 WP_003094697.1 2015561..2016118(-) (pilV) [Pseudomonas aeruginosa strain F044]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=770042 PCP12_RS09385 WP_003094697.1 2015561..2016118(-) (pilV) [Pseudomonas aeruginosa strain F044]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978