Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP08_RS20040 Genome accession   NZ_CP115234
Coordinates   4303692..4304249 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F048     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4298692..4309249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP08_RS20020 (PCP08_20005) pilR 4299968..4301305 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PCP08_RS20025 (PCP08_20010) thiO 4301351..4302445 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  PCP08_RS20030 (PCP08_20015) - 4302580..4303089 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  PCP08_RS20035 (PCP08_20020) - 4303195..4303701 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP08_RS20040 (PCP08_20025) pilV 4303692..4304249 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP08_RS20045 (PCP08_20030) pilW 4304246..4305070 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP08_RS20050 (PCP08_20035) pilX 4305067..4305654 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP08_RS20055 (PCP08_20040) pilY1 4305666..4309157 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=769914 PCP08_RS20040 WP_003119423.1 4303692..4304249(+) (pilV) [Pseudomonas aeruginosa strain F048]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=769914 PCP08_RS20040 WP_003119423.1 4303692..4304249(+) (pilV) [Pseudomonas aeruginosa strain F048]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995