Detailed information NTG0769862

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQC31_RS20205
• Genome accession: NZ_CP127004
• Coordinates: 4094219..4095211 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain YZ3-11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4089219..4100211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQC31_RS20175 (QQC31_20125)	ispD	4089280..4089990 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QQC31_RS20180 (QQC31_20130)	ispF	4089990..4090469 (+)	480	WP_001402449.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQC31_RS20185 (QQC31_20135)	truD	4090466..4091515 (+)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
QQC31_RS20190 (QQC31_20140)	surE	4091496..4092257 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QQC31_RS20195 (QQC31_20145)	pcm	4092251..4092877 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QQC31_RS20200 (QQC31_20150)	nlpD	4093062..4094156 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QQC31_RS20205 (QQC31_20155)	rpoS	4094219..4095211 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QQC31_RS20210 (QQC31_20160)	ygbN	4095305..4096669 (-)	1365	WP_001402448.1	GntP family transporter	-
QQC31_RS20215 (QQC31_20165)	ygbM	4096758..4097534 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QQC31_RS20220 (QQC31_20170)	ygbL	4097539..4098177 (-)	639	WP_001278994.1	aldolase	-
QQC31_RS20225 (QQC31_20175)	otnK	4098174..4099436 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=769862 QQC31_RS20205 WP_000081550.1 4094219..4095211(+) (rpoS) [Escherichia coli strain YZ3-11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=769862 QQC31_RS20205 WP_000081550.1 4094219..4095211(+) (rpoS) [Escherichia coli strain YZ3-11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATTCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715