Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QQC31_RS16705 Genome accession   NZ_CP127004
Coordinates   3389784..3390461 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain YZ3-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3384784..3395461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQC31_RS16690 (QQC31_16650) chiA 3386151..3388844 (+) 2694 WP_001402584.1 bifunctional chitinase/lysozyme -
  QQC31_RS16695 (QQC31_16655) bfd 3389013..3389207 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  QQC31_RS16700 (QQC31_16660) bfr 3389279..3389755 (+) 477 WP_000675504.1 bacterioferritin -
  QQC31_RS16705 (QQC31_16665) pilD 3389784..3390461 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  QQC31_RS16710 (QQC31_16670) gspM 3390461..3390922 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  QQC31_RS16715 (QQC31_16675) gspL 3390919..3392082 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  QQC31_RS16720 (QQC31_16680) gspK 3392097..3393080 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  QQC31_RS16725 (QQC31_16685) gspJ 3393073..3393660 (-) 588 WP_001402582.1 type II secretion system minor pseudopilin GspJ -
  QQC31_RS16730 (QQC31_16690) gspI 3393653..3394030 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  QQC31_RS16735 (QQC31_16695) gspH 3394027..3394536 (-) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  QQC31_RS16740 (QQC31_16700) gspG 3394544..3394981 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=769849 QQC31_RS16705 WP_000178161.1 3389784..3390461(-) (pilD) [Escherichia coli strain YZ3-11]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=769849 QQC31_RS16705 WP_000178161.1 3389784..3390461(-) (pilD) [Escherichia coli strain YZ3-11]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAACTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378