Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QP019_RS08845 Genome accession   NZ_CP126978
Coordinates   1788704..1790542 (-) Length   612 a.a.
NCBI ID   WP_285096057.1    Uniprot ID   -
Organism   Gallibacterium anatis strain YJ922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1783704..1795542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS08820 (QP019_08820) - 1784273..1784734 (-) 462 WP_039084249.1 tripartite tricarboxylate transporter TctB family protein -
  QP019_RS08825 (QP019_08825) - 1784770..1785705 (-) 936 WP_039084250.1 tripartite tricarboxylate transporter substrate binding protein -
  QP019_RS08830 (QP019_08830) dhaL 1785781..1786407 (-) 627 WP_039091110.1 dihydroxyacetone kinase subunit DhaL -
  QP019_RS08835 (QP019_08835) - 1786409..1787413 (-) 1005 WP_039091109.1 dihydroxyacetone kinase subunit DhaK -
  QP019_RS08840 (QP019_08840) - 1787433..1788449 (-) 1017 WP_039091108.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  QP019_RS08845 (QP019_08845) recQ 1788704..1790542 (-) 1839 WP_285096057.1 DNA helicase RecQ Machinery gene
  QP019_RS08850 (QP019_08850) - 1790532..1791374 (-) 843 WP_021460910.1 phospholipase A -
  QP019_RS08855 (QP019_08855) cyaY 1791390..1791704 (-) 315 WP_013746318.1 iron donor protein CyaY -
  QP019_RS08860 (QP019_08860) - 1791950..1792069 (+) 120 WP_018345938.1 lipoprotein -
  QP019_RS08865 (QP019_08865) lysA 1792091..1793344 (+) 1254 WP_285096058.1 diaminopimelate decarboxylase -
  QP019_RS08870 (QP019_08870) - 1793535..1793897 (+) 363 WP_013746321.1 PepSY domain-containing protein -
  QP019_RS08875 (QP019_08875) - 1794092..1795393 (+) 1302 WP_285096059.1 MFS transporter -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69934.15 Da        Isoelectric Point: 8.3568

>NTDB_id=769740 QP019_RS08845 WP_285096057.1 1788704..1790542(-) (recQ) [Gallibacterium anatis strain YJ922]
MCSNSEDQAEVLSPDLIRAKSILQDVFGYQQFRQGQQQIIAATLQGQSSFILMATGGGKSLCYQIPALCFPGLTLVVSPL
IALMQDQVDQLTANGVAAAYLNSSQTLEQQREIEQQALSGKLKLLYISPEKVMTTAFFYFIQQCQVSFIAIDEAHCISQW
GHDFRPEYSQLRSLTRVFPHIPIMALTATADRVTREDILELLNLQQPFVYIGSFDRPNIRYTVVEKFKPQEQLLKFVKSQ
KGKSGIIYANSRNKVERLAEMLQRKGISAKAYHAGFSNEIREQVQHDFQRDNIQIIVATIAFGMGINKPNIRFVLHYDLP
RSIEAYYQETGRAGRDDLPAEAVLFYDHQDYLWLNKLLLEKPDSSQKMIEQHKLQAMGEFAEAQTCRRLVLLNYFAEHRH
QPCNNCDICLNPPKKYDGLIDAQKILSTVYRTGQKFGSYYVIAVLRGVQNQKIQELQHDKLSVFGIGKDKSQEYWHSVIR
QLIHLGFLSQNIANYSALQLTEAARPILRGEMTLSLATPRQNLSMINHAHHYQAQQGDRELFNQLRKLRKQLSDRDNIPP
YAVFNDATLEEMAREMPTTLSEMLQINGVGFKKLERYAQPFLAVITTYSSNK

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=769740 QP019_RS08845 WP_285096057.1 1788704..1790542(-) (recQ) [Gallibacterium anatis strain YJ922]
ATGTGTTCTAATTCAGAAGATCAGGCTGAGGTGTTATCGCCTGATCTTATCCGTGCAAAATCCATTCTTCAGGACGTTTT
TGGTTATCAGCAATTCCGTCAAGGGCAGCAACAGATTATTGCCGCGACATTACAAGGTCAAAGCAGCTTTATTCTGATGG
CGACCGGTGGCGGCAAATCGCTTTGTTATCAAATACCGGCGCTTTGTTTCCCCGGATTGACGCTTGTGGTTTCCCCTTTG
ATCGCTTTAATGCAGGATCAAGTCGATCAACTGACCGCAAACGGCGTGGCAGCAGCTTATCTAAATTCAAGTCAAACTTT
GGAACAGCAGCGAGAAATTGAACAACAGGCGTTATCCGGAAAATTGAAATTGCTCTATATTTCGCCGGAAAAAGTGATGA
CCACAGCGTTTTTCTATTTTATTCAGCAGTGTCAGGTGAGTTTTATTGCGATTGATGAAGCTCATTGTATCTCGCAATGG
GGGCACGATTTTCGTCCGGAATATTCACAGCTACGCAGTTTAACGCGTGTTTTTCCTCACATTCCGATTATGGCACTAAC
CGCAACGGCAGATCGCGTTACTCGAGAAGACATTCTGGAATTACTTAATTTACAGCAACCCTTTGTTTATATTGGAAGTT
TTGATAGACCCAATATCCGTTATACCGTAGTGGAAAAATTTAAACCGCAAGAACAGCTGCTTAAATTTGTTAAATCGCAA
AAAGGTAAGAGTGGCATTATTTACGCCAACAGCCGTAACAAAGTGGAAAGATTGGCGGAAATGTTGCAGCGTAAAGGGAT
TTCCGCAAAGGCGTATCACGCCGGTTTTAGCAATGAAATCAGGGAGCAGGTTCAACACGATTTCCAACGTGACAATATCC
AAATTATTGTTGCCACCATTGCGTTCGGAATGGGGATTAATAAACCGAATATCCGTTTTGTGTTGCATTATGATCTGCCG
AGAAGTATTGAGGCCTATTATCAGGAAACCGGTCGGGCAGGGCGTGATGATCTGCCGGCGGAAGCGGTGCTATTTTATGA
TCATCAAGATTATTTGTGGTTGAATAAATTATTGCTGGAAAAACCCGATTCATCACAAAAAATGATTGAACAGCATAAAT
TACAAGCAATGGGCGAATTTGCGGAAGCACAAACCTGTCGCCGTTTGGTGTTGCTGAATTATTTTGCCGAACATCGCCAT
CAACCTTGCAATAACTGCGATATTTGCCTTAATCCACCGAAAAAATATGATGGTTTGATTGATGCACAAAAAATCCTATC
TACGGTTTATCGTACCGGACAAAAATTCGGTAGTTATTATGTGATTGCCGTGTTGCGAGGCGTGCAAAATCAGAAAATTC
AAGAATTACAACACGATAAATTATCTGTTTTTGGTATCGGCAAGGATAAATCACAAGAGTATTGGCACAGTGTGATCCGC
CAATTAATTCATTTAGGTTTTTTAAGCCAAAATATTGCCAATTATTCGGCGCTTCAGCTTACTGAGGCAGCCAGACCGAT
TTTGCGCGGAGAAATGACGTTATCATTAGCGACCCCACGACAAAATCTTTCAATGATTAACCACGCCCATCACTATCAAG
CACAACAGGGCGATCGGGAACTATTCAATCAATTACGTAAACTCAGAAAACAACTTTCTGATCGGGATAATATTCCGCCT
TATGCTGTATTCAATGATGCTACATTGGAAGAAATGGCACGAGAAATGCCAACCACACTTTCAGAAATGCTGCAAATCAA
TGGTGTAGGTTTCAAAAAATTAGAACGCTATGCCCAACCGTTTTTGGCGGTGATTACTACATATAGTAGTAATAAATAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(35-192)

HRDC domain (HRDC)

(539-605)

RecQ zinc-binding (RecQ_Zn_bind)

(349-410)

RQC domain (RQC)

(412-521)

Helicase conserved C-terminal domain (Helicase_C)

(232-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.688

97.549

0.368