Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QP019_RS01565 Genome accession   NZ_CP126978
Coordinates   273218..275041 (+) Length   607 a.a.
NCBI ID   WP_285096487.1    Uniprot ID   -
Organism   Gallibacterium anatis strain YJ922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 268218..280041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS01545 (QP019_01545) msbA 269496..271244 (+) 1749 WP_285096483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QP019_RS01550 (QP019_01550) lpxK 271265..272242 (+) 978 WP_285096484.1 tetraacyldisaccharide 4'-kinase -
  QP019_RS01555 (QP019_01555) - 272239..272436 (+) 198 WP_285096485.1 Trm112 family protein -
  QP019_RS01560 (QP019_01560) kdsB 272438..273214 (+) 777 WP_285096486.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QP019_RS01565 (QP019_01565) uvrC 273218..275041 (+) 1824 WP_285096487.1 excinuclease ABC subunit UvrC Machinery gene
  QP019_RS01570 (QP019_01570) pgsA 275117..275665 (+) 549 WP_018346416.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QP019_RS01575 (QP019_01575) fabR 275726..276343 (-) 618 WP_018346415.1 HTH-type transcriptional repressor FabR -
  QP019_RS01580 (QP019_01580) oxyR 276346..277260 (-) 915 WP_285096488.1 DNA-binding transcriptional regulator OxyR -
  QP019_RS01585 (QP019_01585) - 277326..277754 (-) 429 WP_285096489.1 DUF2251 domain-containing protein -
  QP019_RS01590 (QP019_01590) - 277766..278242 (-) 477 WP_285096490.1 GAF domain-containing protein -
  QP019_RS01595 (QP019_01595) - 278311..279111 (-) 801 WP_018347339.1 MetQ/NlpA family lipoprotein -
  QP019_RS01600 (QP019_01600) - 279132..279797 (-) 666 WP_013745472.1 methionine ABC transporter permease -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69168.08 Da        Isoelectric Point: 9.4702

>NTDB_id=769713 QP019_RS01565 WP_285096487.1 273218..275041(+) (uvrC) [Gallibacterium anatis strain YJ922]
MFDAKKFLADVSENPGVYRMYDRNNTVIYVGKAKNLKKRLSSYFRKNVNSKKTEALVASIDHIDTTITHSETEALLLEHN
FIKQYQPRYNVLLRDDKSYPYILLTHERHPRITSYRGAKKIAGEYFGPYPHSSAVRETLSLMQKLFPIRQCENSVYNNRS
RPCLQYQIKRCLAPCVAGYVTDEEYQQQVELARLFLQGKDQQVVTHLIEKMEQASNRLDFEAAARYRDQIQAVRSVMEKQ
FVSNDRLDDIDIIAIAYKSGLACVQVLFIRHGKILGNRSYFPKIPANTQIAEVIETFLGQFYLQAHQGRSIPDSIVIDHS
LSGKEMLQTLLSEQAGRQVQIQDKVKGEKNRYLQLAQTNASVALTTQLKQQGRIEERYQALQQLLHMDRIQRMECFDISH
TMGENTIASCVVFGSEGPLKSDYRRFNIEGTHGDDYAAMEQALKKRYDKDLTAEKIPDIIFIDGGKGQLNRALAVFDNLN
VSWNKHKPLLIGVAKGVDRKAGLETLLIGNSEREIHLEPDNLALHLIQHIRDESHNHAISGHRKKRQKAFIQSGLESIEG
VGAKRRQALLKYLGGLQGVRAATIDELASVPGISRSLAEKIFETLKH

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=769713 QP019_RS01565 WP_285096487.1 273218..275041(+) (uvrC) [Gallibacterium anatis strain YJ922]
ATGTTTGATGCAAAAAAATTCCTTGCCGATGTTTCGGAAAATCCGGGTGTTTATCGGATGTATGATCGGAATAACACTGT
TATTTATGTCGGCAAGGCAAAAAATCTCAAAAAACGGCTTTCCAGTTATTTCCGTAAAAATGTTAATAGCAAAAAAACGG
AAGCACTGGTTGCTTCGATCGATCATATTGATACAACGATCACCCATTCAGAAACGGAAGCATTGCTGCTTGAACATAAT
TTCATCAAGCAGTATCAGCCTCGTTATAATGTGTTGTTACGAGATGATAAATCCTATCCCTATATTTTATTAACTCACGA
GCGTCATCCACGAATTACTTCATATCGTGGCGCAAAGAAAATCGCCGGTGAGTATTTTGGGCCTTATCCGCACTCTTCCG
CTGTGCGAGAAACCTTATCATTGATGCAGAAGTTGTTCCCGATTCGTCAGTGTGAGAATAGTGTTTATAACAACCGTTCC
CGTCCTTGCTTGCAATATCAAATTAAACGCTGTCTGGCACCTTGTGTTGCCGGATATGTAACGGATGAAGAGTATCAGCA
ACAGGTGGAGTTGGCGCGCCTGTTTTTGCAAGGTAAAGATCAGCAGGTGGTGACCCATCTGATTGAAAAAATGGAGCAGG
CGAGCAACAGATTAGATTTTGAAGCAGCGGCACGTTATCGCGATCAGATTCAGGCGGTGCGATCCGTAATGGAAAAACAG
TTTGTCAGTAATGATCGTTTGGATGACATCGATATTATCGCGATTGCGTACAAATCCGGATTGGCTTGTGTGCAAGTGTT
GTTTATTCGTCACGGAAAAATATTGGGAAATCGCAGTTATTTCCCGAAAATTCCGGCAAATACGCAGATTGCTGAAGTTA
TTGAAACTTTTTTAGGGCAATTTTATTTACAGGCACATCAAGGGCGGAGTATTCCCGATTCGATTGTGATTGATCACTCT
TTATCCGGAAAAGAGATGTTACAAACGTTATTGAGTGAACAGGCAGGACGTCAAGTTCAGATTCAAGATAAAGTAAAAGG
CGAGAAAAATCGCTATTTACAGTTAGCGCAAACTAATGCTTCGGTGGCATTAACAACGCAATTAAAACAACAAGGCAGAA
TAGAAGAGCGTTATCAAGCGTTGCAACAGTTGCTGCATATGGACAGAATCCAACGAATGGAGTGTTTCGATATTAGCCAT
ACAATGGGTGAAAATACGATTGCTTCCTGTGTTGTTTTTGGTTCGGAAGGACCGTTAAAATCGGATTACCGCCGTTTTAA
TATTGAAGGTACACACGGTGATGATTATGCGGCGATGGAGCAGGCATTGAAGAAAAGATACGATAAAGATCTCACGGCAG
AGAAGATACCTGATATTATTTTTATTGACGGTGGTAAAGGGCAGCTTAATCGTGCTTTGGCAGTGTTTGATAATCTGAAT
GTGAGTTGGAACAAACACAAGCCGTTATTAATCGGCGTGGCGAAAGGGGTTGATCGTAAAGCCGGTTTGGAAACCTTATT
AATCGGTAACAGTGAACGGGAGATTCATTTAGAACCGGACAATTTAGCACTGCATTTAATCCAGCATATTCGAGATGAAT
CACATAATCACGCTATTTCCGGACACCGTAAAAAACGACAGAAAGCATTTATTCAAAGTGGTTTGGAGAGTATTGAGGGC
GTTGGTGCAAAACGACGTCAAGCACTGTTGAAATATCTTGGAGGTTTGCAGGGGGTTCGTGCCGCTACGATAGATGAATT
GGCTTCCGTACCCGGAATTTCACGTTCATTAGCTGAAAAAATCTTTGAAACACTAAAACATTGA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-539)

UvrB/uvrC motif (UVR)

(202-234)

Helix-hairpin-helix domain (HHH_5)

(555-606)

GIY-YIG catalytic domain (GIY-YIG)

(15-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.545

99.176

0.362