Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   QP019_RS01540 Genome accession   NZ_CP126978
Coordinates   267039..269423 (+) Length   794 a.a.
NCBI ID   WP_285096482.1    Uniprot ID   -
Organism   Gallibacterium anatis strain YJ922     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 262039..274423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS01520 (QP019_01520) - 263860..264084 (-) 225 WP_039080894.1 hypothetical protein -
  QP019_RS01525 (QP019_01525) folK 264130..264612 (-) 483 WP_285096481.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QP019_RS01530 (QP019_01530) pcnB 264612..266120 (-) 1509 WP_039089310.1 polynucleotide adenylyltransferase PcnB -
  QP019_RS01535 (QP019_01535) dksA 266257..266706 (-) 450 WP_026211023.1 RNA polymerase-binding protein DksA -
  QP019_RS01540 (QP019_01540) rec2 267039..269423 (+) 2385 WP_285096482.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QP019_RS01545 (QP019_01545) msbA 269496..271244 (+) 1749 WP_285096483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QP019_RS01550 (QP019_01550) lpxK 271265..272242 (+) 978 WP_285096484.1 tetraacyldisaccharide 4'-kinase -
  QP019_RS01555 (QP019_01555) - 272239..272436 (+) 198 WP_285096485.1 Trm112 family protein -
  QP019_RS01560 (QP019_01560) kdsB 272438..273214 (+) 777 WP_285096486.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 91977.30 Da        Isoelectric Point: 8.9403

>NTDB_id=769712 QP019_RS01540 WP_285096482.1 267039..269423(+) (rec2) [Gallibacterium anatis strain YJ922]
MERIAIACIVSCLAMMYLPFAWIFLTAFWGVFFTVASLLALWLIRKKNQWGGVIISIIFSCCWCLFLIQQLITQAQYVQT
FPKKQRAQIMIEKVLHQRDYQTAIALLKFSDQDENYRFYLSWQTPQPLAAGQSWLGEVTLKPLASRANFGGFQRQKWLYA
NHIVGYAVVKNAVLVADHPDLRERLLRHNLDLWQQQPQSELFLALGFGDKRFLSQDTLQLFQQTGTAHLIAISGLHIGLV
MLLGVALARSVQYFLPAHRITPFLPLLFGGMCALLYSYLADFSIPTVRAIIALIFLLWLRFFRGYLNWWQCYVRCIAIFV
LLDPLILLSDSFWLSALAVLCLLIWNHLFPLFVCSVRGKKLHQFGKITYYILALIHLQIGLFLLFTPITLFFFSGFNFFN
LWINLWIVPIFSFVLIPLILFSILTFDYFHSWALCQFIAQQCVEGLKIFKTGWHPVSELENLWISLIFLGLCLLWGMFCI
RYAKYQRTKTDEHHWLPTSTLFRLEVSALVERTDFQTILKIIGMILGIMLWQLGFYYYQQYRTLWTLEMLDVGQGMSILI
RQNSKGVLYDTAASWRDGSMAELEIIPYLQRQSIELEAIIISHDDNDHSGGAEMLLRYFPNATLITSSEKTYAGKTPEPC
YQGVQWRWRYLDWQVIAPYKVEKTAKNHQSCVMLINDGKYKVLLTGDLDKTAELQYLAHFPMIDILQVAHHGSRTSTSTT
FLQKTAPKIALISAGIGNQWHFPHQDIISRLRQFQVDTLVTATVGQIRLRFTKQGNIEVETARTLLQPWFKQLL

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=769712 QP019_RS01540 WP_285096482.1 267039..269423(+) (rec2) [Gallibacterium anatis strain YJ922]
GTGGAGCGAATTGCCATTGCTTGTATTGTCAGTTGTTTGGCGATGATGTATTTGCCGTTTGCATGGATTTTTTTGACTGC
ATTTTGGGGTGTTTTTTTCACTGTCGCTTCATTGCTTGCCCTATGGTTAATAAGAAAGAAAAATCAGTGGGGAGGTGTGA
TCATTTCAATAATATTTTCGTGTTGTTGGTGTCTGTTTTTGATACAACAACTCATCACACAAGCGCAGTATGTGCAGACA
TTCCCGAAGAAACAGCGCGCGCAGATTATGATTGAAAAAGTTTTGCATCAACGGGATTATCAAACGGCAATTGCATTATT
GAAATTTTCGGATCAAGATGAGAACTATCGTTTTTATTTGAGCTGGCAAACACCGCAACCGCTGGCTGCCGGACAATCTT
GGCTAGGAGAAGTCACGCTAAAACCATTAGCGTCAAGAGCCAATTTTGGTGGTTTTCAGCGTCAAAAGTGGCTGTATGCA
AATCATATTGTTGGCTATGCTGTTGTGAAAAATGCAGTTTTGGTTGCAGATCATCCCGATTTGCGCGAGCGATTATTGCG
ACATAATTTGGATTTATGGCAACAGCAACCACAGTCGGAATTATTTCTTGCATTGGGATTTGGTGATAAGCGTTTTTTGA
GTCAGGACACGTTACAACTCTTTCAACAGACCGGAACGGCGCATTTAATTGCGATTTCAGGCTTGCATATCGGTTTAGTA
ATGTTGTTGGGAGTGGCTTTAGCGCGTAGTGTGCAGTATTTCTTGCCGGCGCATCGGATTACGCCGTTTTTGCCGCTATT
ATTCGGTGGAATGTGTGCGTTGTTATACAGTTATTTAGCCGATTTTTCGATCCCGACTGTCCGAGCCATTATTGCATTGA
TCTTCCTGTTGTGGCTAAGATTTTTTCGCGGTTATTTAAATTGGTGGCAATGTTATGTGCGTTGTATCGCGATTTTTGTG
CTATTGGATCCGCTTATTCTGTTAAGTGATAGCTTTTGGCTATCCGCATTGGCGGTGTTATGTTTATTGATATGGAATCA
TCTGTTTCCCTTATTTGTTTGCTCGGTGCGAGGAAAAAAACTCCATCAATTCGGTAAAATTACTTATTACATTTTGGCGC
TTATTCATCTACAAATCGGACTGTTTCTGCTATTTACACCAATTACGCTCTTCTTTTTTTCCGGTTTTAACTTCTTTAAT
TTATGGATTAATTTATGGATTGTGCCGATTTTCAGTTTTGTACTCATTCCATTAATTTTGTTCTCCATTTTAACGTTTGA
TTACTTCCACAGTTGGGCGTTATGCCAGTTTATTGCACAACAATGTGTTGAGGGCTTAAAGATATTTAAAACTGGCTGGC
ATCCTGTTTCAGAGCTGGAAAATCTCTGGATAAGCTTGATTTTTCTAGGCTTGTGTTTGCTTTGGGGAATGTTTTGTATT
CGCTATGCTAAATATCAACGAACTAAAACGGATGAGCATCATTGGTTGCCGACATCAACACTATTCCGTTTAGAGGTGTC
TGCTTTAGTTGAGCGTACCGATTTTCAAACTATTTTGAAAATAATAGGAATGATTTTAGGCATAATGCTATGGCAATTAG
GCTTCTATTATTATCAACAATATCGCACTTTATGGACGCTGGAAATGTTGGATGTAGGGCAGGGGATGTCGATATTGATC
CGGCAAAATAGCAAAGGAGTTTTGTATGATACAGCTGCTTCGTGGCGCGATGGCAGTATGGCTGAATTGGAAATTATTCC
CTATTTGCAACGGCAAAGTATTGAATTGGAAGCGATTATTATTAGTCACGATGATAATGATCACAGCGGTGGTGCTGAGA
TGTTGCTTCGTTATTTTCCGAATGCCACATTGATCACTTCGTCCGAAAAAACATATGCCGGAAAAACGCCTGAACCCTGT
TATCAAGGCGTTCAATGGCGTTGGCGCTATTTAGATTGGCAAGTGATAGCGCCGTATAAAGTAGAAAAAACAGCGAAAAA
TCATCAATCTTGCGTGATGTTGATCAATGATGGCAAATATAAGGTCCTGTTAACCGGTGATCTGGATAAAACGGCGGAAT
TACAGTATTTAGCGCATTTCCCAATGATTGATATTTTGCAGGTAGCACATCACGGCAGCCGTACTTCGACCAGTACCACA
TTTTTGCAAAAAACAGCACCGAAGATAGCATTAATTTCCGCCGGCATAGGCAATCAATGGCATTTTCCGCATCAGGACAT
TATTTCACGATTACGGCAATTTCAAGTTGATACGTTGGTAACGGCAACCGTAGGACAGATTCGATTACGTTTTACCAAGC
AGGGCAATATTGAAGTTGAAACGGCAAGAACATTATTACAACCTTGGTTTAAGCAGTTACTTTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(551-735)

Domain of unknown function (DUF4131) (DUF4131)

(27-169)

Competence protein (Competence)

(205-480)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

39.643

91.814

0.364