Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QP020_RS08485 Genome accession   NZ_CP126977
Coordinates   1785446..1787251 (-) Length   601 a.a.
NCBI ID   WP_285099419.1    Uniprot ID   -
Organism   Gallibacterium anatis strain DFSO2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1780446..1792251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS08465 (QP020_08465) - 1781206..1782480 (-) 1275 WP_065230899.1 MFS transporter -
  QP020_RS08470 (QP020_08470) dhaL 1782522..1783148 (-) 627 WP_065230898.1 dihydroxyacetone kinase subunit DhaL -
  QP020_RS08475 (QP020_08475) - 1783150..1784154 (-) 1005 WP_042907177.1 dihydroxyacetone kinase subunit DhaK -
  QP020_RS08480 (QP020_08480) - 1784176..1785192 (-) 1017 WP_285097736.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  QP020_RS08485 (QP020_08485) recQ 1785446..1787251 (-) 1806 WP_285099419.1 DNA helicase RecQ Machinery gene
  QP020_RS08490 (QP020_08490) - 1787271..1788113 (-) 843 WP_285097737.1 phospholipase A -
  QP020_RS08495 (QP020_08495) cyaY 1788129..1788443 (-) 315 WP_018345937.1 iron donor protein CyaY -
  QP020_RS08500 (QP020_08500) - 1788554..1788673 (+) 120 WP_039142951.1 lipoprotein -
  QP020_RS08505 (QP020_08505) lysA 1788695..1789948 (+) 1254 WP_285097739.1 diaminopimelate decarboxylase -
  QP020_RS08510 (QP020_08510) - 1790139..1790501 (+) 363 WP_285097741.1 PepSY domain-containing protein -
  QP020_RS08515 (QP020_08515) - 1790695..1791996 (+) 1302 WP_285097743.1 MFS transporter -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68903.09 Da        Isoelectric Point: 9.0625

>NTDB_id=769686 QP020_RS08485 WP_285099419.1 1785446..1787251(-) (recQ) [Gallibacterium anatis strain DFSO2]
MQSTGLIRAKSILQDVFGYQQFRQGQQQIIEATLRGQSSFILMATGGGKSLCYQIPALCFPGLTLVVSPLIALMQDQVDQ
LTANGVAAAYLNSSQTLEQQREIEQQALSGKLKLLYISPEKVMTTAFFYFIQQCQVSFIAIDEAHCISQWGHDFRPEYSQ
LRSLTRVFPHIPIMALTATADRVTREDILELLNLQQPFVYIGSFDRPNIRYTVVEKFKPQEQLLKFVKSQKGKSGIIYAN
SRNKVERLAEMLQRKGISAKAYHAGFSNEIREQVQHDFQRDNIQIIVATIAFGMGINKPNIRFVLHYDLPRSIEAYYQET
GRAGRDDLPAEAVLFYDHQDYLWLNKLLQEKPDSSQKMIEQHKLQAMGEFAEAQTCRRLVLLNYFAEHRHQPCNNCDICL
NPPKKYDGLIDAQKILSTVYRTGQKFGSYYVIAVLRGVQNQKIQELQHDKLSVFGIGKDKSQEYWHSVIRQLIHLGFLSQ
NIANYSALQLTEAARPILRGEMTLSLATPRQNLSMINHAHHYQAQQGDRELFNQLRKLRKQLSDRDNIPPYAVFNDATLE
EMAREMPTTLSEMLQINGVGFKKLERYAQSFLKVITTYKPN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=769686 QP020_RS08485 WP_285099419.1 1785446..1787251(-) (recQ) [Gallibacterium anatis strain DFSO2]
ATGCAATCGACCGGTCTTATCCGTGCAAAGTCCATTCTTCAAGACGTTTTTGGCTATCAACAATTTCGTCAAGGTCAGCA
GCAAATTATTGAAGCAACATTGCGAGGTCAAAGTAGCTTTATTCTGATGGCGACCGGTGGCGGCAAATCGCTTTGTTATC
AAATACCGGCACTTTGTTTTCCCGGATTGACGCTTGTAGTTTCCCCTTTGATCGCTTTAATGCAGGATCAAGTCGATCAA
CTGACCGCAAACGGCGTGGCAGCAGCTTATCTGAATTCAAGTCAAACTTTGGAACAGCAACGAGAAATTGAACAACAGGC
GTTATCCGGAAAATTGAAATTGCTCTATATTTCGCCGGAAAAAGTGATGACCACAGCATTTTTCTATTTTATTCAGCAGT
GTCAGGTGAGTTTTATTGCGATTGATGAAGCTCATTGTATCTCGCAATGGGGGCACGATTTTCGTCCGGAATATTCACAG
CTACGCAGTTTAACGCGTGTTTTTCCCCACATTCCGATTATGGCACTAACCGCAACGGCAGATCGCGTTACTCGAGAAGA
CATTCTGGAATTGCTTAATTTACAGCAACCCTTTGTTTATATTGGGAGTTTTGATAGACCCAATATCCGTTATACCGTAG
TGGAAAAATTTAAACCTCAAGAACAGTTGCTTAAATTTGTCAAATCGCAAAAAGGCAAGAGTGGCATTATTTATGCCAAC
AGCCGTAACAAAGTGGAAAGATTGGCGGAAATGTTGCAGCGTAAAGGGATTTCCGCAAAGGCGTATCACGCCGGTTTTAG
CAATGAAATCAGGGAGCAGGTTCAACACGATTTTCAACGTGACAATATCCAAATTATTGTTGCCACCATTGCATTCGGAA
TGGGCATTAATAAACCGAATATCCGTTTTGTGTTGCATTATGATCTGCCGAGAAGTATTGAGGCCTATTATCAGGAAACC
GGTCGGGCAGGGCGTGATGATCTGCCGGCGGAAGCGGTGCTGTTTTATGATCATCAAGATTATTTGTGGTTGAATAAATT
ATTGCAGGAAAAGCCCGATTCATCACAAAAAATGATTGAACAGCATAAATTGCAAGCAATGGGCGAATTTGCCGAAGCAC
AAACTTGTCGCCGCTTGGTGTTACTGAATTATTTTGCCGAACATCGCCATCAACCTTGCAATAACTGTGATATTTGCCTT
AACCCACCGAAAAAATATGATGGTTTGATTGATGCGCAAAAAATTCTTTCTACGGTTTATCGTACCGGACAAAAATTCGG
TAGTTATTATGTGATTGCCGTGTTGCGAGGCGTGCAAAATCAGAAAATTCAAGAATTACAACACGATAAATTATCTGTTT
TTGGTATCGGCAAGGATAAATCACAAGAGTATTGGCACAGTGTGATCCGTCAATTAATTCATTTAGGTTTTTTAAGCCAA
AATATTGCCAATTATTCGGCGCTTCAGCTTACTGAGGCAGCCAGACCGATTTTGCGCGGAGAAATGACGTTATCATTAGC
AACCCCACGGCAAAATCTTTCAATGATTAACCACGCTCATCACTATCAAGCACAACAGGGTGATCGGGAACTCTTTAACC
AATTACGCAAATTAAGAAAACAACTCTCCGATCGGGATAACATTCCGCCTTATGCGGTATTTAACGATGCCACTTTAGAA
GAGATGGCGCGAGAAATGCCGACAACACTTTCAGAAATGCTGCAAATCAATGGTGTAGGTTTCAAAAAATTAGAACGCTA
TGCTCAATCATTTTTAAAAGTTATTACAACATATAAACCCAATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(222-325)

HRDC domain (HRDC)

(529-595)

RecQ zinc-binding (RecQ_Zn_bind)

(339-400)

DEAD/DEAH box helicase (DEAD)

(25-182)

RQC domain (RQC)

(402-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.647

99.002

0.373