Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QP020_RS06490 Genome accession   NZ_CP126977
Coordinates   1364694..1365296 (-) Length   200 a.a.
NCBI ID   WP_013746785.1    Uniprot ID   A0A0A2XW54
Organism   Gallibacterium anatis strain DFSO2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1359694..1370296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS06475 (QP020_06475) - 1362465..1363553 (-) 1089 WP_065230507.1 hypothetical protein -
  QP020_RS06480 (QP020_06480) - 1363724..1364158 (-) 435 WP_039162627.1 GNAT family N-acetyltransferase -
  QP020_RS06485 (QP020_06485) - 1364158..1364595 (-) 438 WP_018347124.1 DNA polymerase III subunit chi -
  QP020_RS06490 (QP020_06490) recR 1364694..1365296 (-) 603 WP_013746785.1 recombination mediator RecR Machinery gene
  QP020_RS06495 (QP020_06495) - 1365369..1365698 (-) 330 WP_013746784.1 YbaB/EbfC family nucleoid-associated protein -
  QP020_RS06500 (QP020_06500) dnaX 1365771..1367936 (-) 2166 WP_039142539.1 DNA polymerase III subunit gamma/tau -
  QP020_RS06505 (QP020_06505) apt 1367958..1368503 (-) 546 WP_013746782.1 adenine phosphoribosyltransferase -
  QP020_RS06510 (QP020_06510) lpxM 1368612..1369562 (-) 951 WP_285097567.1 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22153.40 Da        Isoelectric Point: 5.2907

>NTDB_id=769676 QP020_RS06490 WP_013746785.1 1364694..1365296(-) (recR) [Gallibacterium anatis strain DFSO2]
MQISPLLDELMDALRCLPGVGPKSAQRMAYYLLQRDRSGAMNLAKTLTEAMAHIGHCSQCRTFTEEEVCNICNNYRRQEN
GQLCIVEMPSDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLQTESFSEVILATNPTIEGDATANYIAEM
CQQYGVKVSRIAHGIPVGGELEMVDGTTLSHSFIGRRELK

Nucleotide


Download         Length: 603 bp        

>NTDB_id=769676 QP020_RS06490 WP_013746785.1 1364694..1365296(-) (recR) [Gallibacterium anatis strain DFSO2]
ATGCAAATTAGCCCTTTACTTGATGAATTGATGGATGCTTTGCGTTGCCTGCCGGGAGTCGGCCCGAAATCAGCACAACG
AATGGCATATTATTTATTACAGCGTGATCGCAGCGGCGCAATGAATTTGGCTAAAACGCTGACAGAAGCGATGGCGCATA
TCGGTCATTGCAGTCAATGTCGTACTTTTACCGAAGAAGAAGTGTGTAATATTTGCAATAACTATCGCCGTCAAGAGAAC
GGGCAGTTATGTATAGTGGAAATGCCTTCCGATATTCAGGCGATTGAACAGACAGGGCAATTTTCAGGTCGTTACTTTGT
ACTAATGGGACATTTATCGCCATTGGATGGTATCGGGCCAAAAGAGATTGGCTTGGACTTATTGCAGAAAAGATTGCAGA
CAGAATCTTTTTCTGAAGTGATCTTAGCGACTAATCCAACAATTGAAGGCGATGCGACGGCGAATTATATTGCCGAAATG
TGTCAACAGTATGGTGTAAAAGTGAGCCGTATTGCTCACGGCATTCCGGTTGGCGGTGAATTGGAAATGGTGGACGGTAC
AACATTATCGCACTCGTTTATTGGCAGACGAGAATTAAAGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2XW54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.5

0.45
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.624

98.5

0.41