Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QP020_RS00525 Genome accession   NZ_CP126977
Coordinates   106773..107756 (-) Length   327 a.a.
NCBI ID   WP_013745555.1    Uniprot ID   A0A0A2XA41
Organism   Gallibacterium anatis strain DFSO2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 101773..112756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS00505 (QP020_00505) - 103293..104210 (-) 918 WP_285098440.1 EamA family transporter -
  QP020_RS00510 (QP020_00510) - 104271..104387 (-) 117 Protein_95 transposase -
  QP020_RS00515 (QP020_00515) - 104480..105616 (+) 1137 WP_349293446.1 transposase -
  QP020_RS00520 (QP020_00520) - 105776..106780 (-) 1005 WP_039157261.1 peptide ABC transporter ATP-binding protein -
  QP020_RS00525 (QP020_00525) amiE 106773..107756 (-) 984 WP_013745555.1 dipeptide ABC transporter ATP-binding protein Regulator
  QP020_RS00530 (QP020_00530) dppC 107765..108655 (-) 891 WP_013745554.1 dipeptide ABC transporter permease DppC -
  QP020_RS00535 (QP020_00535) - 108667..109677 (-) 1011 WP_285098447.1 ABC transporter permease subunit -
  QP020_RS00540 (QP020_00540) - 109771..111366 (-) 1596 WP_285098449.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36099.85 Da        Isoelectric Point: 6.8938

>NTDB_id=769657 QP020_RS00525 WP_013745555.1 106773..107756(-) (amiE) [Gallibacterium anatis strain DFSO2]
MSLLTVNNLSVHFGDKDKPFKAVDRISYQVEQGEVLGIVGESGSGKSVSSLAIMGLIDFPGRVSADQLQFDGQDLLKLDE
KQKQKLVGADVAMIFQDPMTSLNPCYTVGFQIMEALKVHQGGSRRARRERTLELLKLVGIPDPESRLDVYPHQLSGGMSQ
RVMIAMAIACKPKLLIADEPTTALDVTIQAQIIDLLLELQQKENMALILITHDLALVAEAAHRIIVMYAGQVVEEGLAAD
IFREPKHPYTQALLRSLPEFATGKSRLQSLPGVVPGKYDRPQGCLLNPRCPYATDECRKTEPQLHKLNNRLVKCHTPLDA
QGNPQYV

Nucleotide


Download         Length: 984 bp        

>NTDB_id=769657 QP020_RS00525 WP_013745555.1 106773..107756(-) (amiE) [Gallibacterium anatis strain DFSO2]
ATGTCGTTATTAACCGTCAACAATTTATCTGTTCATTTTGGCGATAAAGATAAGCCGTTCAAAGCGGTTGATCGCATCAG
TTATCAAGTTGAACAGGGTGAAGTTTTAGGTATTGTCGGCGAGTCCGGTTCAGGAAAATCGGTAAGTTCCTTAGCCATTA
TGGGCTTAATTGATTTTCCGGGACGTGTCAGTGCCGACCAATTGCAGTTTGATGGGCAAGATCTATTAAAACTGGATGAA
AAACAGAAGCAAAAATTGGTCGGTGCCGATGTAGCAATGATCTTCCAAGATCCAATGACTAGTTTAAACCCTTGTTATAC
CGTTGGTTTCCAAATTATGGAAGCACTTAAGGTACACCAAGGCGGAAGTCGCCGTGCACGCCGTGAACGTACCCTTGAAT
TGTTAAAACTGGTCGGTATTCCCGATCCGGAATCACGGCTTGATGTTTATCCGCACCAATTATCCGGTGGGATGAGCCAA
CGTGTAATGATCGCAATGGCTATCGCCTGCAAGCCGAAATTATTGATTGCTGATGAGCCGACCACCGCATTAGATGTAAC
CATTCAAGCACAAATTATTGATCTGCTTTTAGAATTACAGCAAAAAGAGAATATGGCGCTGATTCTGATTACGCACGATT
TAGCATTGGTGGCGGAAGCGGCACACCGTATTATCGTGATGTATGCCGGTCAAGTGGTCGAAGAAGGATTGGCAGCAGAT
ATTTTCCGCGAGCCGAAACACCCTTATACGCAGGCATTATTACGCTCCTTGCCGGAATTTGCTACCGGTAAATCGCGTTT
ACAATCATTACCCGGAGTGGTACCGGGAAAATACGATCGTCCGCAAGGGTGTCTGCTTAATCCGCGTTGCCCGTATGCTA
CCGATGAATGTCGTAAAACTGAACCGCAACTACACAAGCTGAATAACCGTTTGGTGAAATGTCATACGCCTCTTGATGCA
CAAGGAAATCCTCAATATGTCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(24-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2XA41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

44.586

96.024

0.428
  oppD Streptococcus mutans UA159

44.951

93.884

0.422
  amiE Streptococcus thermophilus LMG 18311

43.631

96.024

0.419
  amiE Streptococcus thermophilus LMD-9

43.631

96.024

0.419