Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP86_RS29880 Genome accession   NZ_CP115223
Coordinates   6365720..6366277 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F056     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6360720..6371277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP86_RS29865 (PCP86_29865) pilY1 6360812..6364303 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PCP86_RS29870 (PCP86_29870) pilX 6364315..6364902 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP86_RS29875 (PCP86_29875) pilW 6364899..6365723 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP86_RS29880 (PCP86_29880) pilV 6365720..6366277 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP86_RS29885 (PCP86_29885) - 6366268..6366774 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP86_RS29890 (PCP86_29890) - 6366880..6367389 (-) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  PCP86_RS29895 (PCP86_29895) thiO 6367524..6368618 (+) 1095 WP_023087807.1 glycine oxidase ThiO -
  PCP86_RS29900 (PCP86_29900) pilR 6368664..6370001 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=769645 PCP86_RS29880 WP_003119423.1 6365720..6366277(-) (pilV) [Pseudomonas aeruginosa strain F056]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=769645 PCP86_RS29880 WP_003119423.1 6365720..6366277(-) (pilV) [Pseudomonas aeruginosa strain F056]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995