Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QP018_RS09575 Genome accession   NZ_CP126975
Coordinates   1998820..2000655 (-) Length   611 a.a.
NCBI ID   WP_285090735.1    Uniprot ID   A0AAX3XAJ9
Organism   Gallibacterium anatis strain BJF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1993820..2005655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS09550 (QP018_09550) - 1994390..1994851 (-) 462 WP_285090731.1 tripartite tricarboxylate transporter TctB family protein -
  QP018_RS09555 (QP018_09555) - 1994887..1995822 (-) 936 WP_039084250.1 tripartite tricarboxylate transporter substrate binding protein -
  QP018_RS09560 (QP018_09560) dhaL 1995898..1996524 (-) 627 WP_285090732.1 dihydroxyacetone kinase subunit DhaL -
  QP018_RS09565 (QP018_09565) - 1996526..1997530 (-) 1005 WP_285090733.1 dihydroxyacetone kinase subunit DhaK -
  QP018_RS09570 (QP018_09570) - 1997550..1998566 (-) 1017 WP_285090734.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  QP018_RS09575 (QP018_09575) recQ 1998820..2000655 (-) 1836 WP_285090735.1 DNA helicase RecQ Machinery gene
  QP018_RS09580 (QP018_09580) - 2000645..2001487 (-) 843 WP_285090736.1 phospholipase A -
  QP018_RS09585 (QP018_09585) cyaY 2001503..2001817 (-) 315 WP_018345937.1 iron donor protein CyaY -
  QP018_RS09590 (QP018_09590) - 2001928..2002047 (+) 120 WP_285090737.1 lipoprotein -
  QP018_RS09595 (QP018_09595) lysA 2002069..2003322 (+) 1254 WP_285090738.1 diaminopimelate decarboxylase -
  QP018_RS09600 (QP018_09600) - 2003513..2003875 (+) 363 WP_285090739.1 PepSY domain-containing protein -
  QP018_RS09605 (QP018_09605) - 2004069..2005370 (+) 1302 WP_013746322.1 MFS transporter -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69936.25 Da        Isoelectric Point: 8.7450

>NTDB_id=769632 QP018_RS09575 WP_285090735.1 1998820..2000655(-) (recQ) [Gallibacterium anatis strain BJF12]
MCSNSEDQAEALSPDLIRAKSILQDVFGYQQFRQGQQQIIAATLQGQSSFILMATGGGKSLCYQIPALCFPGLTLVVSPL
IALMQDQVDQLTANGVAAAYLNSSQTLEQQREIEQQALSGKLKLLYISPEKVMTTAFFYFIQQCQVSFIAIDEAHCISQW
GHDFRPEYSQLRSLTRVFPHIPIMALTATADRVTREDILELLNLQQPFVYIGSFDRPNIRYTVVEKFKPQEQLLKFVKSQ
KGKSGIIYANSRNKVERLAEMLQRKGISAKAYHAGFSNEIREQIQHDFQRDNIQIIVATIAFGMGINKPNIRFVLHYDLP
RSIEAYYQETGRAGRDDLPAEAVLFYDHQDYLWLNKLLQEKPDSSQKMIEQHKLQAMGEFAEAQTCRRLVLLNYFAEHRH
QPCNNCDICLNPPKKYDGLIDAQKILSTVYRTGQKFGSYYVIAVLRGVQNQKIQELQHDKLSVFGIGKDKSQEYWHSVIR
QLIHLGFLSQNIANYSALQLTEAARPILRGEMTLSLATPRQNLSMINHAHRYQAKQGDRELFNQLRKLRKQLSDRDNIPP
YAVFNDATLEEMAREMPITLSEMLQINGVGFKKLERYAQSFLKVITTYKPN

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=769632 QP018_RS09575 WP_285090735.1 1998820..2000655(-) (recQ) [Gallibacterium anatis strain BJF12]
ATGTGTTCTAATTCAGAAGATCAGGCTGAGGCGTTATCGCCTGATCTTATCCGTGCAAAATCCATTCTTCAGGACGTTTT
TGGTTATCAGCAATTCCGTCAAGGGCAGCAACAGATTATTGCGGCGACATTACAAGGTCAAAGCAGCTTTATTCTGATGG
CGACCGGTGGCGGCAAATCGCTTTGTTATCAAATACCGGCACTTTGTTTTCCCGGATTGACGCTTGTGGTTTCCCCTTTG
ATCGCTTTAATGCAGGATCAAGTCGATCAACTGACCGCAAACGGCGTGGCAGCAGCTTATCTGAATTCAAGTCAAACTTT
GGAACAGCAACGAGAAATTGAACAACAGGCGTTATCCGGAAAATTGAAATTGCTCTATATTTCGCCGGAAAAAGTGATGA
CCACAGCATTTTTCTATTTTATTCAGCAGTGTCAGGTGAGTTTTATTGCGATTGATGAAGCTCATTGTATCTCGCAATGG
GGGCACGATTTTCGTCCGGAATATTCACAGCTACGCAGTTTAACGCGTGTTTTTCCCCACATTCCGATTATGGCACTAAC
CGCAACGGCAGATCGCGTTACTCGAGAAGACATTCTGGAATTGCTTAATTTACAGCAACCCTTTGTTTATATTGGGAGTT
TTGATAGACCCAATATCCGTTATACCGTAGTGGAAAAATTTAAACCTCAAGAACAGTTGCTTAAATTTGTCAAATCGCAA
AAAGGCAAGAGTGGCATTATTTATGCCAACAGCCGTAACAAAGTGGAAAGATTGGCGGAAATGTTGCAGCGTAAAGGGAT
TTCCGCAAAGGCATATCACGCCGGTTTTAGCAATGAAATCAGGGAGCAGATTCAACACGATTTTCAACGTGACAATATCC
AAATTATTGTTGCCACCATTGCGTTCGGAATGGGGATTAATAAACCGAATATCCGTTTTGTGTTGCATTATGATCTGCCG
AGAAGTATTGAGGCCTATTATCAGGAAACCGGTCGGGCAGGGCGTGATGATCTGCCGGCGGAAGCGGTGCTGTTTTATGA
TCATCAAGATTATTTGTGGTTGAATAAATTATTGCAGGAAAAACCCGATTCATCACAAAAAATGATTGAACAGCATAAAT
TGCAAGCAATGGGCGAATTTGCCGAAGCACAAACTTGTCGCCGCTTGGTGTTACTGAATTATTTTGCCGAACATCGCCAT
CAACCTTGCAATAACTGCGATATTTGCCTTAACCCACCGAAAAAATATGATGGTTTGATTGATGCGCAAAAAATCCTTTC
TACGGTTTATCGTACCGGACAAAAATTTGGTAGTTATTATGTGATTGCTGTATTGCGAGGCGTGCAAAATCAGAAAATTC
AAGAGTTACAACACGATAAATTGTCCGTTTTTGGTATTGGCAAGGATAAATCTCAAGAATATTGGCATAGTGTGATCCGT
CAATTAATTCATTTAGGTTTTTTAAGCCAAAATATTGCCAATTATTCGGCGCTTCAGCTTACTGAGGCAGCCAGACCGAT
TTTGCGCGGAGAAATGACGTTATCATTAGCAACTCCACGACAAAATCTTTCAATGATTAACCACGCTCATCGCTATCAAG
CGAAGCAGGGTGATCGGGAACTATTCAATCAATTACGTAAACTCAGAAAACAACTTTCTGATCGGGATAATATTCCGCCT
TATGCTGTATTCAATGATGCTACATTGGAAGAAATGGCACGAGAAATGCCGATAACACTTTCAGAAATGCTGCAAATCAA
TGGTGTAGGTTTCAAAAAATTAGAACGTTATGCTCAATCATTTTTAAAAGTTATTACAACATATAAACCCAATTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(349-410)

DEAD/DEAH box helicase (DEAD)

(35-192)

HRDC domain (HRDC)

(539-605)

Helicase conserved C-terminal domain (Helicase_C)

(232-335)

RQC domain (RQC)

(412-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX3XAJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.815

97.381

0.368