Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QP018_RS00920 Genome accession   NZ_CP126975
Coordinates   189988..191811 (+) Length   607 a.a.
NCBI ID   WP_021461079.1    Uniprot ID   A0AAX3XE47
Organism   Gallibacterium anatis strain BJF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 184988..196811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS00900 (QP018_00900) msbA 186266..188014 (+) 1749 WP_013745483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QP018_RS00905 (QP018_00905) lpxK 188035..189012 (+) 978 WP_285092486.1 tetraacyldisaccharide 4'-kinase -
  QP018_RS00910 (QP018_00910) - 189009..189206 (+) 198 WP_039080900.1 Trm112 family protein -
  QP018_RS00915 (QP018_00915) kdsB 189208..189984 (+) 777 WP_021461078.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QP018_RS00920 (QP018_00920) uvrC 189988..191811 (+) 1824 WP_021461079.1 excinuclease ABC subunit UvrC Machinery gene
  QP018_RS00925 (QP018_00925) pgsA 191887..192435 (+) 549 WP_021461080.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QP018_RS00930 (QP018_00930) fabR 192496..193113 (-) 618 WP_285092485.1 HTH-type transcriptional repressor FabR -
  QP018_RS00935 (QP018_00935) oxyR 193116..194030 (-) 915 WP_285092484.1 DNA-binding transcriptional regulator OxyR -
  QP018_RS00940 (QP018_00940) - 194096..194524 (-) 429 WP_039143276.1 DUF2251 domain-containing protein -
  QP018_RS00945 (QP018_00945) - 194536..195012 (-) 477 WP_039139764.1 GAF domain-containing protein -
  QP018_RS00950 (QP018_00950) - 195082..195882 (-) 801 WP_021461085.1 MetQ/NlpA family lipoprotein -
  QP018_RS00955 (QP018_00955) - 195903..196568 (-) 666 WP_013745472.1 methionine ABC transporter permease -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69124.06 Da        Isoelectric Point: 9.4672

>NTDB_id=769603 QP018_RS00920 WP_021461079.1 189988..191811(+) (uvrC) [Gallibacterium anatis strain BJF12]
MFDAKKFLADVSENPGVYRMYDRNNTVIYVGKAKNLKKRLSSYFRKNVNSKKTEALVASIDHIDTTITHSETEALLLEHN
FIKQYQPRYNVLLRDDKSYPYILLTHERHPRITSYRGAKKIAGEYFGPYPHSSAVRETLSLMQKLFPIRQCENSVYNNRS
RPCLQYQIKRCLAPCVAGYVTDEEYQQQVELARLFLQGKDQQVVTHLIEKMEQASNRLDFEAAARYRDQIQAVRSVMEKQ
FVSNDRLDDIDIIAIAYKSGLACVQVLFIRHGKILGNRSYFPKIPANTQIAEVIETFLGQFYLQAHQGRSIPDSIVIDHS
LAGKEMLQTLLSEQAGRQVQIQDKVKGEKNRYLQLAQTNASVALTTQLKQQGRIEERYQALQQLLHMDKIQRMECFDISH
TMGENTIASCVVFGSEGPLKSDYRRFNIEGTHGDDYAAMEQALKKRYDKDLTAEKIPDIIFIDGGKGQLNRALAVFDNLN
VSWNKHKPLLIGVAKGVDRKAGLETLLIGNSEREIHLEPDNLALHLIQHIRDESHNHAISGHRKKRQKAFIQSGLESIEG
VGAKRRQALLKYLGGLQGVRAATIDELASVPGISRSLAEKIFETLKH

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=769603 QP018_RS00920 WP_021461079.1 189988..191811(+) (uvrC) [Gallibacterium anatis strain BJF12]
ATGTTTGATGCAAAAAAATTCCTTGCCGATGTTTCGGAAAATCCGGGTGTTTATCGGATGTATGATCGGAATAACACTGT
TATTTATGTCGGCAAGGCAAAAAATCTCAAAAAACGGCTTTCCAGTTATTTCCGCAAAAATGTTAATAGCAAAAAAACGG
AAGCACTGGTTGCTTCGATCGATCATATTGATACAACGATCACCCATTCAGAAACGGAAGCATTGCTGCTTGAACATAAT
TTCATCAAGCAGTATCAGCCTCGTTATAATGTGTTGTTACGAGATGATAAATCCTATCCCTATATTTTATTAACTCACGA
GCGTCATCCACGAATTACTTCATATCGTGGTGCAAAGAAAATCGCCGGTGAGTATTTTGGGCCTTATCCGCACTCTTCCG
CTGTGCGAGAAACCTTATCATTAATGCAGAAGTTGTTCCCGATTCGTCAGTGTGAGAATAGTGTTTATAACAACCGTTCC
CGTCCTTGCTTGCAATATCAAATTAAACGCTGTTTGGCACCTTGTGTTGCCGGATATGTAACGGATGAAGAGTATCAGCA
ACAGGTGGAGTTGGCGCGCCTGTTCTTGCAAGGTAAAGATCAGCAGGTGGTGACCCATCTGATTGAAAAAATGGAGCAGG
CGAGCAATAGATTAGATTTTGAAGCGGCGGCACGTTATCGCGATCAGATTCAGGCGGTGCGATCTGTAATGGAAAAACAG
TTTGTTAGTAATGATCGTTTGGATGACATCGATATTATCGCGATTGCGTACAAATCCGGATTGGCTTGTGTGCAAGTGTT
GTTTATTCGTCACGGAAAAATATTGGGAAATCGCAGTTATTTCCCGAAAATTCCGGCAAATACGCAGATTGCTGAAGTTA
TTGAAACTTTTTTAGGGCAATTTTATTTACAGGCACATCAAGGGCGGAGTATTCCCGATTCGATTGTGATTGATCACTCT
TTAGCCGGAAAAGAGATGTTACAAACGTTATTGAGTGAACAGGCAGGACGTCAAGTTCAGATTCAAGATAAAGTAAAAGG
CGAGAAAAACCGTTATTTACAGTTAGCGCAAACTAATGCTTCGGTGGCATTAACAACGCAATTAAAACAACAAGGCAGAA
TAGAAGAGCGTTATCAAGCGTTGCAACAGTTGCTGCATATGGACAAAATCCAACGAATGGAGTGTTTCGACATTAGCCAT
ACAATGGGGGAAAATACGATTGCTTCCTGTGTTGTTTTTGGTTCGGAAGGGCCGTTAAAATCGGATTACCGCCGTTTTAA
TATTGAAGGTACACACGGTGATGATTATGCGGCGATGGAGCAGGCATTGAAGAAAAGATACGATAAAGATCTCACGGCAG
AGAAGATACCTGATATTATTTTTATTGACGGTGGTAAAGGGCAGCTCAATCGTGCTTTGGCAGTGTTTGATAATCTGAAT
GTGAGTTGGAACAAACACAAGCCGTTATTAATCGGCGTGGCGAAAGGGGTTGATCGTAAAGCCGGTTTGGAAACCTTATT
AATCGGTAACAGTGAACGGGAGATTCATTTAGAACCGGATAATTTAGCACTGCATTTAATCCAGCATATTCGAGATGAAT
CACATAATCACGCTATTTCCGGACACCGTAAAAAACGGCAGAAAGCGTTTATTCAGAGCGGTTTGGAGAGCATTGAAGGC
GTTGGTGCAAAACGACGTCAAGCACTGTTGAAATATCTTGGCGGTTTGCAGGGGGTTCGCGCTGCTACGATAGATGAATT
GGCTTCCGTACCCGGAATTTCACGTTCATTAGCTGAAAAAATCTTTGAAACACTAAAACATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(202-234)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-539)

GIY-YIG catalytic domain (GIY-YIG)

(15-90)

Helix-hairpin-helix domain (HHH_5)

(555-606)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX3XE47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.545

99.176

0.362