Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   QP018_RS00895 Genome accession   NZ_CP126975
Coordinates   183809..186193 (+) Length   794 a.a.
NCBI ID   WP_285092487.1    Uniprot ID   A0AAX3XFV4
Organism   Gallibacterium anatis strain BJF12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 178809..191193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS00875 (QP018_00875) - 179935..180801 (-) 867 WP_285092489.1 MFS transporter -
  QP018_RS00880 (QP018_00880) folK 180901..181383 (-) 483 WP_039092866.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QP018_RS00885 (QP018_00885) pcnB 181383..182891 (-) 1509 WP_285092488.1 polynucleotide adenylyltransferase PcnB -
  QP018_RS00890 (QP018_00890) dksA 183027..183476 (-) 450 WP_031204683.1 RNA polymerase-binding protein DksA -
  QP018_RS00895 (QP018_00895) rec2 183809..186193 (+) 2385 WP_285092487.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QP018_RS00900 (QP018_00900) msbA 186266..188014 (+) 1749 WP_013745483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QP018_RS00905 (QP018_00905) lpxK 188035..189012 (+) 978 WP_285092486.1 tetraacyldisaccharide 4'-kinase -
  QP018_RS00910 (QP018_00910) - 189009..189206 (+) 198 WP_039080900.1 Trm112 family protein -
  QP018_RS00915 (QP018_00915) kdsB 189208..189984 (+) 777 WP_021461078.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 92029.54 Da        Isoelectric Point: 9.2520

>NTDB_id=769602 QP018_RS00895 WP_285092487.1 183809..186193(+) (rec2) [Gallibacterium anatis strain BJF12]
MERTAIACIVSCLVMMYLPFEWIFLTKFWGIFFAITSSLTVLLIRKKSPWSNVIIAIIFSCCWCLFLIQQLITQAQYLHT
LPKKQRAEILIEKVLHQRDYQTAIASLKFSHKDEKYRFYLSWQTPQQLAAGQSWQGEVTLKPLASRVNFGGFQRQKWLYA
NHIVGYAVIKKAVFIADNPDLRERLLRHNLNLWQQQPQSELFLALGFGDKRLLNKEMLQLFQQTGTAHLIAISGLHIGLV
MLLGVALARCVQYLLPTHRITPFFPLLFGGICALLYSYLADFSIPTVRAIIALIFLLWLRFFRSYLNWWQCYVRCIAIFV
LLDPLILLSDSFWLSALAVLCLLIWNHLFPLSVCSVRGKKLHQFGKITYYILALIHLQIGLFLLFTPITLFFFSGFNFFN
LWINLWIVPIFSFVLIPLILFSILTFDYFHSWALCQFIAQQCVEGLKVFKTGWHPVSELENLWISLIFLGLCLLWGMFCI
RYAKYQRTKTDEHHWLPTSTLFRLEVSALVERTDFQTILKIIGMILGIMLWQLGFYYYQQYRTLWTLEMLDVGQGMSILI
RQNGKGVLYDTAASWRGGSMAELEIIPYLQRQGIELEAIIISHDDNDHSGGAEMLLRYFPNATLITSSEKTYAGKTPEPC
YQGVQWRWRDLDWQVIAPYKVEKTAKNHQSCVMLINDGKYKVLLTGDLDKTAELQYLAHFPMIDILQVAHHGSRTSTSTT
FLQKTAPKIALISAGIGNQWHFPHQDIISRLRQFQVDTLVTATVGQIRLRFTKQGNIEVETARTLLQPWFKQLL

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=769602 QP018_RS00895 WP_285092487.1 183809..186193(+) (rec2) [Gallibacterium anatis strain BJF12]
GTGGAACGAACTGCCATTGCTTGTATTGTCAGTTGTTTGGTGATGATGTATTTGCCGTTTGAATGGATTTTTTTAACTAA
ATTTTGGGGTATTTTTTTCGCTATTACTTCGTCACTGACCGTATTGTTAATAAGAAAGAAAAGTCCGTGGAGTAATGTGA
TTATTGCAATAATATTTTCGTGTTGTTGGTGTTTATTTTTGATCCAACAACTAATAACTCAAGCGCAATATTTGCATACA
TTGCCGAAGAAACAGCGTGCAGAAATTTTGATTGAAAAGGTTTTGCACCAACGCGATTATCAAACGGCAATTGCATCATT
GAAATTTTCACATAAAGATGAAAAGTATCGTTTTTATTTAAGTTGGCAAACACCGCAACAGCTAGCTGCCGGACAATCTT
GGCAAGGAGAGGTGACATTAAAACCTTTAGCATCAAGAGTAAATTTTGGTGGTTTTCAGCGTCAAAAATGGCTGTATGCA
AATCATATCGTTGGTTATGCCGTTATTAAAAAAGCAGTTTTTATTGCTGATAATCCTGATTTACGCGAACGATTATTACG
ACATAATCTTAATTTATGGCAACAGCAACCACAATCGGAATTATTTCTTGCATTGGGGTTTGGCGATAAACGTCTTTTAA
ATAAAGAAATGCTACAACTGTTTCAACAAACAGGAACAGCACATTTAATAGCTATTTCAGGATTGCATATCGGTTTGGTA
ATGTTATTGGGGGTTGCTTTAGCTCGTTGTGTGCAATATCTATTGCCTACTCATCGTATTACACCGTTTTTCCCATTACT
ATTCGGTGGAATATGCGCTTTGTTATACAGTTATTTAGCTGATTTTTCGATCCCGACTGTCCGAGCCATTATTGCATTGA
TCTTCCTGTTGTGGCTAAGATTTTTTCGCAGTTATTTAAATTGGTGGCAATGTTATGTGCGTTGTATCGCGATTTTTGTG
CTATTGGATCCACTTATTCTGTTAAGTGATAGCTTTTGGCTATCCGCATTGGCGGTGTTATGTTTATTGATATGGAATCA
TCTGTTTCCATTATCTGTTTGCTCGGTGCGAGGAAAAAAACTCCATCAATTCGGTAAAATTACTTATTACATTTTGGCGC
TTATTCATCTACAAATCGGACTGTTTCTGCTATTTACACCAATTACACTCTTCTTTTTTTCCGGTTTTAACTTCTTTAAT
TTATGGATTAATTTATGGATTGTGCCGATTTTCAGTTTTGTACTCATTCCATTAATTTTGTTCTCCATTTTAACGTTTGA
TTACTTCCACAGTTGGGCGTTATGCCAGTTTATTGCACAACAGTGTGTTGAGGGATTAAAGGTATTTAAAACTGGCTGGC
ATCCTGTTTCAGAGCTGGAAAATCTCTGGATAAGCTTGATTTTTCTAGGCTTGTGTTTGCTTTGGGGAATGTTTTGTATT
CGCTATGCTAAATATCAACGAACTAAAACGGATGAGCATCATTGGTTGCCGACATCAACGCTATTCCGTTTAGAGGTGTC
TGCTTTAGTTGAGCGTACCGATTTTCAAACTATTTTGAAAATAATAGGAATGATTTTAGGCATAATGCTATGGCAATTAG
GCTTCTATTATTATCAACAATATCGCACTTTATGGACGCTGGAAATGTTGGATGTAGGGCAGGGGATGTCGATATTGATC
CGGCAAAATGGCAAAGGCGTTTTGTATGATACAGCCGCTTCGTGGCGCGGTGGCAGTATGGCTGAATTGGAAATTATTCC
CTATTTGCAACGGCAAGGTATTGAATTGGAAGCGATTATTATTAGTCACGATGATAATGATCACAGCGGTGGTGCTGAGA
TGTTGCTTCGTTATTTTCCGAATGCCACATTGATCACTTCATCCGAAAAAACATATGCCGGAAAAACGCCTGAACCCTGT
TATCAAGGCGTTCAATGGCGTTGGCGCGATTTAGATTGGCAAGTGATAGCGCCGTATAAAGTAGAAAAAACAGCGAAAAA
TCATCAATCTTGCGTGATGTTGATCAATGATGGCAAATATAAGGTCCTGTTAACCGGTGATCTGGATAAAACGGCGGAAT
TACAGTATTTAGCGCATTTCCCAATGATTGATATTTTGCAGGTAGCACATCACGGCAGCCGTACTTCGACCAGTACCACA
TTTTTGCAAAAAACAGCACCGAAGATAGCATTAATTTCCGCCGGCATAGGCAATCAATGGCATTTTCCGCATCAGGACAT
TATTTCACGATTACGGCAATTTCAAGTTGATACGCTGGTAACGGCAACCGTAGGACAGATTCGATTACGTTTTACCAAGC
AGGGCAATATTGAAGTTGAAACGGCAAGAACATTATTACAACCTTGGTTTAAGCAGTTACTTTAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(205-480)

Metallo-beta-lactamase superfamily (Lactamase_B)

(551-735)

Domain of unknown function (DUF4131) (DUF4131)

(28-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX3XFV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

40.329

91.814

0.37