Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP16_RS01430 Genome accession   NZ_CP115222
Coordinates   311827..312384 (+) Length   185 a.a.
NCBI ID   WP_016253895.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F057     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306827..317384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP16_RS01410 (PCP16_01410) pilR 308103..309440 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PCP16_RS01415 (PCP16_01415) thiO 309486..310580 (-) 1095 WP_016253894.1 glycine oxidase ThiO -
  PCP16_RS01420 (PCP16_01420) - 310715..311224 (+) 510 WP_003161431.1 GspH/FimT family pseudopilin -
  PCP16_RS01425 (PCP16_01425) - 311330..311836 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP16_RS01430 (PCP16_01430) pilV 311827..312384 (+) 558 WP_016253895.1 type 4a pilus minor pilin PilV Machinery gene
  PCP16_RS01435 (PCP16_01435) pilW 312381..313205 (+) 825 WP_016253896.1 type 4a pilus minor pilin PilW -
  PCP16_RS01440 (PCP16_01440) pilX 313202..313789 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  PCP16_RS01445 (PCP16_01445) pilY1 313801..317292 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20064.17 Da        Isoelectric Point: 7.9350

>NTDB_id=769590 PCP16_RS01430 WP_016253895.1 311827..312384(+) (pilV) [Pseudomonas aeruginosa strain F057]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=769590 PCP16_RS01430 WP_016253895.1 311827..312384(+) (pilV) [Pseudomonas aeruginosa strain F057]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

100

100

1