Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LPH32_RS19975 Genome accession   NZ_AP025214
Coordinates   4105070..4105585 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain 2017.09.02CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4100070..4110585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH32_RS19930 (VEGS19_A37950) csrA 4100792..4100977 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  LPH32_RS19960 (VEGS19_A37960) yqaB 4102300..4102866 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  LPH32_RS19965 (VEGS19_A37970) yqaA 4102863..4103291 (+) 429 WP_001287454.1 YqaA family protein -
  LPH32_RS19970 (VEGS19_A37980) gshA 4103364..4104920 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  LPH32_RS19975 (VEGS19_A37990) luxS 4105070..4105585 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  LPH32_RS19980 (VEGS19_A38000) emrB 4105649..4107187 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  LPH32_RS19985 (VEGS19_A38010) emrA 4107204..4108376 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  LPH32_RS19990 (VEGS19_A38020) emrR 4108503..4109033 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  LPH32_RS19995 (VEGS19_A38030) ygaH 4109124..4109459 (-) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  LPH32_RS20000 (VEGS19_A38040) ygaZ 4109449..4110186 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=76958 LPH32_RS19975 WP_001130208.1 4105070..4105585(+) (luxS) [Escherichia coli strain 2017.09.02CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=76958 LPH32_RS19975 WP_001130208.1 4105070..4105585(+) (luxS) [Escherichia coli strain 2017.09.02CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment