Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   F6I26_RS08200 Genome accession   NZ_CP126961
Coordinates   1610482..1611261 (+) Length   259 a.a.
NCBI ID   WP_070812405.1    Uniprot ID   -
Organism   Streptococcus anginosus strain UMB4708     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605482..1616261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS08140 (F6I26_008140) - 1605515..1605982 (-) 468 WP_070811618.1 hypothetical protein -
  F6I26_RS08145 (F6I26_008145) - 1605979..1606461 (-) 483 WP_070811617.1 siphovirus Gp157 family protein -
  F6I26_RS08150 (F6I26_008150) - 1606458..1606802 (-) 345 WP_070811616.1 hypothetical protein -
  F6I26_RS08155 (F6I26_008155) - 1606804..1607052 (-) 249 WP_101800955.1 hypothetical protein -
  F6I26_RS08160 (F6I26_008160) - 1607045..1607209 (-) 165 WP_167697709.1 hypothetical protein -
  F6I26_RS08165 (F6I26_008165) - 1607210..1607959 (-) 750 WP_167697708.1 DUF1642 domain-containing protein -
  F6I26_RS08170 (F6I26_008170) - 1607980..1608210 (-) 231 WP_070811614.1 hypothetical protein -
  F6I26_RS08175 (F6I26_008175) - 1608212..1608523 (-) 312 WP_057489777.1 hypothetical protein -
  F6I26_RS08180 (F6I26_008180) - 1608637..1608792 (+) 156 WP_167697707.1 hypothetical protein -
  F6I26_RS08185 (F6I26_008185) - 1608778..1608993 (-) 216 WP_070812402.1 helix-turn-helix transcriptional regulator -
  F6I26_RS08190 (F6I26_008190) - 1609050..1609676 (+) 627 WP_070812403.1 hypothetical protein -
  F6I26_RS08195 (F6I26_008195) - 1609680..1610006 (-) 327 WP_070812404.1 hypothetical protein -
  F6I26_RS08200 (F6I26_008200) irvR 1610482..1611261 (+) 780 WP_070812405.1 S24 family peptidase Regulator
  F6I26_RS08205 (F6I26_008205) - 1611273..1611692 (+) 420 WP_070812406.1 hypothetical protein -
  F6I26_RS08210 (F6I26_008210) - 1611693..1611962 (+) 270 WP_070812407.1 DUF4177 domain-containing protein -
  F6I26_RS08215 (F6I26_008215) - 1612090..1613232 (+) 1143 WP_101800956.1 site-specific integrase -
  F6I26_RS08220 (F6I26_008220) - 1613321..1613596 (-) 276 WP_003023726.1 HU family DNA-binding protein -
  F6I26_RS08225 (F6I26_008225) - 1613725..1614558 (-) 834 WP_024052826.1 DegV family protein -
  F6I26_RS08230 (F6I26_008230) - 1614788..1615741 (+) 954 WP_024052827.1 iron chelate uptake ABC transporter family permease subunit -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29685.39 Da        Isoelectric Point: 4.8051

>NTDB_id=769563 F6I26_RS08200 WP_070812405.1 1610482..1611261(+) (irvR) [Streptococcus anginosus strain UMB4708]
MARGRGKLTPHELEAMEVVSNNLQKILFEKNLKQSQIADALNIPRSTFNDYIKGNTLPIPGNIQKIADYFGLLKSDIDPR
FASANTSPTLSTTAKAISETVERLEEPRRVIVLDTAKTQLEEQKRSQKTEISEQLTEYHVFEKLSAGNGYDYMEDRNYDV
VFYNKDIDHDFASWVYGDSMEPKFLDGSVALIKDTGWDYDGAIYAVDWDGQSYIKKVYKEKDGLRLVSINDKYDDKFAKW
EEEPRIIGKVVGNFMPVER

Nucleotide


Download         Length: 780 bp        

>NTDB_id=769563 F6I26_RS08200 WP_070812405.1 1610482..1611261(+) (irvR) [Streptococcus anginosus strain UMB4708]
ATGGCTAGAGGACGAGGAAAATTAACTCCGCATGAGTTAGAAGCGATGGAAGTTGTATCTAACAATCTTCAAAAAATTTT
ATTTGAAAAAAATTTAAAACAATCACAAATAGCTGACGCGCTCAATATTCCAAGAAGTACTTTTAACGACTATATAAAAG
GGAATACCTTGCCTATCCCTGGAAACATCCAAAAAATAGCTGATTATTTTGGTTTATTAAAATCCGACATTGACCCAAGA
TTTGCTTCTGCGAACACATCTCCCACTCTTTCCACTACGGCAAAAGCTATTTCTGAGACCGTAGAGCGCTTGGAAGAACC
TCGTAGGGTAATTGTACTAGACACGGCTAAAACGCAGCTAGAAGAACAAAAACGGTCGCAGAAAACAGAAATTTCCGAGC
AGCTTACTGAATATCATGTATTCGAGAAATTATCTGCCGGAAATGGTTACGACTACATGGAAGATCGTAACTACGATGTC
GTATTCTACAACAAAGATATAGACCACGACTTTGCTTCTTGGGTCTATGGAGATTCCATGGAACCTAAATTTCTTGACGG
ATCTGTCGCCCTTATTAAAGATACTGGTTGGGACTATGATGGCGCCATTTATGCCGTGGATTGGGACGGTCAAAGCTATA
TCAAGAAAGTCTATAAAGAAAAAGATGGCCTAAGGCTCGTCTCTATCAATGACAAATACGATGATAAATTCGCAAAATGG
GAAGAAGAACCCCGTATCATCGGTAAGGTGGTTGGCAATTTTATGCCGGTAGAAAGATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(142-251)

Helix-turn-helix (HTH_3)

(29-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

35.452

100

0.409