Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   F6I26_RS00235 Genome accession   NZ_CP126961
Coordinates   31395..32168 (+) Length   257 a.a.
NCBI ID   WP_070672490.1    Uniprot ID   A0A412PM86
Organism   Streptococcus anginosus strain UMB4708     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26395..37168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS00215 (F6I26_000215) mreD 27174..27674 (+) 501 WP_024052913.1 rod shape-determining protein MreD -
  F6I26_RS00220 (F6I26_000220) - 27784..28974 (+) 1191 WP_024052912.1 CHAP domain-containing protein -
  F6I26_RS00225 (F6I26_000225) - 29107..30075 (+) 969 WP_024052911.1 ribose-phosphate diphosphokinase -
  F6I26_RS00230 (F6I26_000230) - 30230..31417 (+) 1188 WP_024052910.1 pyridoxal phosphate-dependent aminotransferase -
  F6I26_RS00235 (F6I26_000235) recO 31395..32168 (+) 774 WP_070672490.1 DNA repair protein RecO Machinery gene
  F6I26_RS00240 (F6I26_000240) plsX 32165..33163 (+) 999 WP_024052908.1 phosphate acyltransferase PlsX -
  F6I26_RS00245 (F6I26_000245) - 33160..33405 (+) 246 WP_024052907.1 acyl carrier protein -
  F6I26_RS00250 (F6I26_000250) purC 33564..34271 (+) 708 WP_024052906.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30101.57 Da        Isoelectric Point: 6.0889

>NTDB_id=769484 F6I26_RS00235 WP_070672490.1 31395..32168(+) (recO) [Streptococcus anginosus strain UMB4708]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVVQPLVVADFLMKINDDGLSYIDDYQEVTTFQ
HINHDLFTMAYATYVVALADASIQDNKIDSALFAFLQKTLELMEQGLDYEVLTNIFEIQILSRFGIYLNFHECCFCHRVG
LPFDFSFTYNGVLCSEHYNKDERRSHLDPNIPYLLDQFQAIQYSELETISLNPELKRQLRKVIDQIYEEYVGIHLKPKKF
IDSLGDWGEILKNKELK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=769484 F6I26_RS00235 WP_070672490.1 31395..32168(+) (recO) [Streptococcus anginosus strain UMB4708]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAATCGTAATTTCCGAGAAAATGATAAACTGGTCAAAATTTT
CACAGAGCAAGCTGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCGGTTGTCCAACCATTGG
TAGTGGCCGATTTTTTGATGAAAATAAATGATGACGGTTTGAGTTATATCGATGATTATCAAGAGGTTACGACTTTCCAG
CATATCAATCATGATTTGTTTACAATGGCTTATGCAACTTATGTGGTAGCTCTGGCAGACGCCAGTATTCAGGATAATAA
AATAGATTCGGCTCTCTTTGCTTTTTTGCAAAAAACGTTGGAATTGATGGAGCAGGGCTTGGATTATGAGGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCACGTTTTGGAATTTATTTGAATTTCCATGAATGCTGCTTTTGCCACCGAGTAGGA
TTGCCGTTTGATTTTTCTTTTACTTATAACGGCGTTTTATGCTCGGAACATTACAACAAAGACGAGAGACGGAGTCATTT
GGATCCCAACATTCCTTACTTATTAGACCAATTTCAAGCGATTCAATATAGTGAATTGGAGACCATTTCTTTGAATCCTG
AGTTAAAACGACAATTACGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGCCAAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAGAAATTTTAAAGAATAAGGAGTTGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-236)

Recombination protein O N terminal (RecO_N)

(4-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PM86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.902

99.222

0.743